Horticultural Plant Journal (Nov 2015)
A de novo Genome of a Chinese Radish Cultivar
- Zhang Xiaohui,
- Yue Zhen,
- Mei Shiyong,
- Qiu Yang,
- Yang Xinhua,
- Chen Xiaohua,
- Cheng Feng,
- Wu Zhangyan,
- Sun Yuyan,
- Jing Yi,
- Liu Bo,
- Shen Di,
- Wang Haiping,
- Cui Na,
- Duan Yundan,
- Wu Jian,
- Wang Jinglei,
- Gan Caixia,
- Wang Jun,
- Wang Xiaowu,
- Li Xixiang
Affiliations
- Zhang Xiaohui
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Yue Zhen
- The Beijing Genomics Institute, Shenzhen, Guangdong 518083, China
- Mei Shiyong
- Institute of Economic Crop, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
- Qiu Yang
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Yang Xinhua
- The Beijing Genomics Institute, Shenzhen, Guangdong 518083, China
- Chen Xiaohua
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Cheng Feng
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Wu Zhangyan
- The Beijing Genomics Institute, Shenzhen, Guangdong 518083, China
- Sun Yuyan
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Jing Yi
- The Beijing Genomics Institute, Shenzhen, Guangdong 518083, China
- Liu Bo
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Shen Di
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Wang Haiping
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Cui Na
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Duan Yundan
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Wu Jian
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Wang Jinglei
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Gan Caixia
- Institute of Economic Crop, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
- Wang Jun
- The Beijing Genomics Institute, Shenzhen, Guangdong 518083, China
- Wang Xiaowu
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- Li Xixiang
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Beijing 100081, China
- DOI
- https://doi.org/10.16420/j.issn.2095-9885.2016-0028
- Journal volume & issue
-
Vol. 1,
no. 3
pp. 155 – 164
Abstract
Here, we report a high-quality draft genome of a Chinese radish (Raphanus sativus) cultivar. This draft contains 387.73 Mb of assembled scaffolds, 83.93% of the scaffolds were anchored onto nine pseudochromosomes and 95.09% of 43 240 protein-coding genes were functionally annotated. 184.75 Mb (47.65%) of repeat sequences was identified in the assembled genome. By comparative analyses of the radish genome against 10 other plant genomes, 2 275 genes in 780 gene families were found unique to R. sativus. This genome is a good reference for genomic study and of great value for genetic improvement of radish.
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