Combined TP53 and RB1 Loss Promotes Prostate Cancer Resistance to a Spectrum of Therapeutics and Confers Vulnerability to Replication Stress
Michael D. Nyquist,
Alexandra Corella,
Ilsa Coleman,
Navonil De Sarkar,
Arja Kaipainen,
Gavin Ha,
Roman Gulati,
Lisa Ang,
Payel Chatterjee,
Jared Lucas,
Colin Pritchard,
Gail Risbridger,
John Isaacs,
Bruce Montgomery,
Colm Morrissey,
Eva Corey,
Peter S. Nelson
Affiliations
Michael D. Nyquist
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Alexandra Corella
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Ilsa Coleman
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Navonil De Sarkar
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Arja Kaipainen
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Gavin Ha
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Roman Gulati
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Lisa Ang
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Payel Chatterjee
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Jared Lucas
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Colin Pritchard
Department of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA
Gail Risbridger
Department of Anatomy and Cell Biology, Monash University, Melbourne, VIC 3000, Australia
John Isaacs
Department of Oncology, Johns Hopkins School of Medicine, Baltimore, MD 21231, USA
Bruce Montgomery
Department of Medicine, University of Washington, Seattle, WA 98195, USA
Colm Morrissey
Department of Urology, University of Washington, Seattle, WA 98195, USA
Eva Corey
Department of Urology, University of Washington, Seattle, WA 98195, USA
Peter S. Nelson
Divisions of Human Biology and Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA; Department of Medicine, University of Washington, Seattle, WA 98195, USA; Department of Urology, University of Washington, Seattle, WA 98195, USA; Corresponding author
Summary: Prostate cancers (PCs) with loss of the potent tumor suppressors TP53 and RB1 exhibit poor outcomes. TP53 and RB1 also influence cell plasticity and are frequently lost in PCs with neuroendocrine (NE) differentiation. Therapeutic strategies that address these aggressive variant PCs are urgently needed. Using deep genomic profiling of 410 metastatic biopsies, we determine the relationships between combined TP53 and RB1 loss and PC phenotypes. Notably, 40% of TP53/RB1-deficient tumors are classified as AR-active adenocarcinomas, indicating that NE differentiation is not an obligate consequence of TP53/RB1 inactivation. A gene expression signature reflecting TP53/RB1 loss is associated with diminished responses to AR antagonists and reduced survival. These tumors exhibit high proliferation rates and evidence of elevated DNA repair processes. While tumor cells lacking TP53/RB1 are highly resistant to all single-agent therapeutics tested, the combination of PARP and ATR inhibition is found to produce significant responses, reflecting a clinically exploitable vulnerability resulting from replication stress.