Nature Communications (Feb 2023)
Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria
- Idowu B. Olawoye,
- Paul E. Oluniyi,
- Judith U. Oguzie,
- Jessica N. Uwanibe,
- Tolulope A. Kayode,
- Testimony J. Olumade,
- Fehintola V. Ajogbasile,
- Edyth Parker,
- Philomena E. Eromon,
- Priscilla Abechi,
- Tope A. Sobajo,
- Chinedu A. Ugwu,
- Uwem E. George,
- Femi Ayoade,
- Kazeem Akano,
- Nicholas E. Oyejide,
- Iguosadolo Nosamiefan,
- Iyanuoluwa Fred-Akintunwa,
- Kemi Adedotun-Sulaiman,
- Farida B. Brimmo,
- Babatunde B. Adegboyega,
- Courage Philip,
- Richard A. Adeleke,
- Grace C. Chukwu,
- Muhammad I. Ahmed,
- Oludayo O. Ope-Ewe,
- Shobi G. Otitoola,
- Olusola A. Ogunsanya,
- Mudasiru F. Saibu,
- Ayotunde E. Sijuwola,
- Grace O. Ezekiel,
- Oluwagboadurami G. John,
- Julie O. Akin-John,
- Oluwasemilogo O. Akinlo,
- Olanrewaju O. Fayemi,
- Testimony O. Ipaye,
- Deborah C. Nwodo,
- Abolade E. Omoniyi,
- Iyobosa B. Omwanghe,
- Christabel A. Terkuma,
- Johnson Okolie,
- Olubukola Ayo-Ale,
- Odia Ikponmwosa,
- Ebo Benevolence,
- Grace O. Naregose,
- Akhilomen E. Patience,
- Osiemi Blessing,
- Airende Micheal,
- Agbukor Jacqueline,
- John O. Aiyepada,
- Paulson Ebhodaghe,
- Omiunu Racheal,
- Esumeh Rita,
- Giwa E. Rosemary,
- Ehikhametalor Solomon,
- Ekanem Anieno,
- Yerumoh Edna,
- Aire O. Chris,
- Adomeh I. Donatus,
- Ephraim Ogbaini-Emovon,
- Mirabeau Y. Tatfeng,
- Hannah E. Omunakwe,
- Mienye Bob-Manuel,
- Rahaman A. Ahmed,
- Chika K. Onwuamah,
- Joseph O. Shaibu,
- Azuka Okwuraiwe,
- Anthony E. Ataga,
- Andrew Bock-Oruma,
- Funmi Daramola,
- Ibrahim F. Yusuf,
- Akinwumi Fajola,
- Nsikak-Abasi Ntia,
- Julie J. Ekpo,
- Anietie E. Moses,
- Beatrice W. Moore-Igwe,
- Oluwatosin E. Fakayode,
- Monilade Akinola,
- Ibrahim M. Kida,
- Bamidele S. Oderinde,
- Zara W. Wudiri,
- Oluwapelumi O. Adeyemi,
- Olusola A. Akanbi,
- Anthony Ahumibe,
- Afolabi Akinpelu,
- Oyeronke Ayansola,
- Olajumoke Babatunde,
- Adesuyi A. Omoare,
- Chimaobi Chukwu,
- Nwando G. Mba,
- Ewean C. Omoruyi,
- Olasunkanmi Olisa,
- Olatunji K. Akande,
- Ifeanyi E. Nwafor,
- Matthew A. Ekeh,
- Erim Ndoma,
- Richard L. Ewah,
- Rosemary O. Duruihuoma,
- Augustine Abu,
- Elizabeth Odeh,
- Venatius Onyia,
- Chiedozie K. Ojide,
- Sylvanus Okoro,
- Daniel Igwe,
- Emeka O. Ogah,
- Kamran Khan,
- Nnennaya A. Ajayi,
- Collins N. Ugwu,
- Kingsley N. Ukwaja,
- Ngozi I. Ugwu,
- Chukwuyem Abejegah,
- Nelson Adedosu,
- Olufemi Ayodeji,
- Ahmed A. Liasu,
- Rafiu O. Isamotu,
- Galadima Gadzama,
- Brittany A. Petros,
- Katherine J. Siddle,
- Stephen F. Schaffner,
- George Akpede,
- Cyril Oshomah Erameh,
- Marycelin M. Baba,
- Femi Oladiji,
- Rosemary Audu,
- Nnaemeka Ndodo,
- Adeola Fowotade,
- Sylvanus Okogbenin,
- Peter O. Okokhere,
- Danny J. Park,
- Bronwyn L. Mcannis,
- Ifedayo M. Adetifa,
- Chikwe Ihekweazu,
- Babatunde L. Salako,
- Oyewale Tomori,
- Anise N. Happi,
- Onikepe A. Folarin,
- Kristian G. Andersen,
- Pardis C. Sabeti,
- Christian T. Happi
Affiliations
- Idowu B. Olawoye
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Paul E. Oluniyi
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Judith U. Oguzie
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Jessica N. Uwanibe
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Tolulope A. Kayode
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Testimony J. Olumade
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Fehintola V. Ajogbasile
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Edyth Parker
- Department of Immunology and Microbiology, The Scripps Research Institute
- Philomena E. Eromon
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Priscilla Abechi
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Tope A. Sobajo
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Chinedu A. Ugwu
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Uwem E. George
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Femi Ayoade
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Kazeem Akano
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Nicholas E. Oyejide
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Iguosadolo Nosamiefan
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Iyanuoluwa Fred-Akintunwa
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Kemi Adedotun-Sulaiman
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Farida B. Brimmo
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Babatunde B. Adegboyega
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Courage Philip
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Richard A. Adeleke
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Grace C. Chukwu
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Muhammad I. Ahmed
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Oludayo O. Ope-Ewe
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Shobi G. Otitoola
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Olusola A. Ogunsanya
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Mudasiru F. Saibu
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Ayotunde E. Sijuwola
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Grace O. Ezekiel
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Oluwagboadurami G. John
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Julie O. Akin-John
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Oluwasemilogo O. Akinlo
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Olanrewaju O. Fayemi
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Testimony O. Ipaye
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Deborah C. Nwodo
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Abolade E. Omoniyi
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Iyobosa B. Omwanghe
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Christabel A. Terkuma
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Johnson Okolie
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Olubukola Ayo-Ale
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Odia Ikponmwosa
- Irrua Specialist Teaching Hospital
- Ebo Benevolence
- Irrua Specialist Teaching Hospital
- Grace O. Naregose
- Irrua Specialist Teaching Hospital
- Akhilomen E. Patience
- Irrua Specialist Teaching Hospital
- Osiemi Blessing
- Irrua Specialist Teaching Hospital
- Airende Micheal
- Irrua Specialist Teaching Hospital
- Agbukor Jacqueline
- Irrua Specialist Teaching Hospital
- John O. Aiyepada
- Irrua Specialist Teaching Hospital
- Paulson Ebhodaghe
- Irrua Specialist Teaching Hospital
- Omiunu Racheal
- Irrua Specialist Teaching Hospital
- Esumeh Rita
- Irrua Specialist Teaching Hospital
- Giwa E. Rosemary
- Irrua Specialist Teaching Hospital
- Ehikhametalor Solomon
- Irrua Specialist Teaching Hospital
- Ekanem Anieno
- Irrua Specialist Teaching Hospital
- Yerumoh Edna
- Irrua Specialist Teaching Hospital
- Aire O. Chris
- Irrua Specialist Teaching Hospital
- Adomeh I. Donatus
- Irrua Specialist Teaching Hospital
- Ephraim Ogbaini-Emovon
- Irrua Specialist Teaching Hospital
- Mirabeau Y. Tatfeng
- Department of Medical Laboratory Science, Niger Delta University
- Hannah E. Omunakwe
- Satellite Molecular Laboratory, Rivers State University Teaching Hospital
- Mienye Bob-Manuel
- Satellite Molecular Laboratory, Rivers State University Teaching Hospital
- Rahaman A. Ahmed
- The Nigerian Institute of Medical Research
- Chika K. Onwuamah
- The Nigerian Institute of Medical Research
- Joseph O. Shaibu
- The Nigerian Institute of Medical Research
- Azuka Okwuraiwe
- The Nigerian Institute of Medical Research
- Anthony E. Ataga
- Molecular Laboratory, Regional Centre for Biotechnology and Bioresources Research, University of Port Harcourt
- Andrew Bock-Oruma
- Family Physician, SPDC
- Funmi Daramola
- Clinical Health, SPDC
- Ibrahim F. Yusuf
- Clinical Health, SPDC
- Akinwumi Fajola
- Regional Community Health, SPDC
- Nsikak-Abasi Ntia
- Occupational Health, SPDC
- Julie J. Ekpo
- Department of Medical Microbiology and Parasitology, University of Uyo
- Anietie E. Moses
- Department of Medical Microbiology and Parasitology, University of Uyo
- Beatrice W. Moore-Igwe
- Rivers State University
- Oluwatosin E. Fakayode
- Department of Public Health, Ministry of Health
- Monilade Akinola
- WHO Polio Laboratory, University of Maiduguri Teaching Hospital
- Ibrahim M. Kida
- Department of Immunology, University of Maiduguri Teaching Hospital
- Bamidele S. Oderinde
- Department of Immunology, University of Maiduguri Teaching Hospital
- Zara W. Wudiri
- Department of Community Medicine, University of Maiduguri Teaching Hospital
- Oluwapelumi O. Adeyemi
- Department of Medical Microbiology and Parasitology. Faculty of Basic Clinical Sciences. College of Health Sciences, University of Ilorin
- Olusola A. Akanbi
- Nigeria Centre for Disease Control
- Anthony Ahumibe
- Nigeria Centre for Disease Control
- Afolabi Akinpelu
- Nigeria Centre for Disease Control
- Oyeronke Ayansola
- Nigeria Centre for Disease Control
- Olajumoke Babatunde
- Nigeria Centre for Disease Control
- Adesuyi A. Omoare
- Nigeria Centre for Disease Control
- Chimaobi Chukwu
- Nigeria Centre for Disease Control
- Nwando G. Mba
- Nigeria Centre for Disease Control
- Ewean C. Omoruyi
- Medical Microbiology and Parasitology Department, College of Medicine, University of Ibadan
- Olasunkanmi Olisa
- Biorepository Clinical Virology Laboratory, University of Ibadan
- Olatunji K. Akande
- Biorepository Clinical Virology Laboratory, University of Ibadan
- Ifeanyi E. Nwafor
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Matthew A. Ekeh
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Erim Ndoma
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Richard L. Ewah
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Rosemary O. Duruihuoma
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Augustine Abu
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Elizabeth Odeh
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Venatius Onyia
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Chiedozie K. Ojide
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Sylvanus Okoro
- Alex Ekwueme Federal University Teaching Hospital
- Daniel Igwe
- Alex Ekwueme Federal University Teaching Hospital
- Emeka O. Ogah
- Alex Ekwueme Federal University Teaching Hospital
- Kamran Khan
- Department of Medicine, University of Toronto
- Nnennaya A. Ajayi
- Internal Medicine Department, Alex Ekwueme Federal University Teaching Hospital
- Collins N. Ugwu
- Internal Medicine Department, Alex Ekwueme Federal University Teaching Hospital
- Kingsley N. Ukwaja
- Internal Medicine Department, Alex Ekwueme Federal University Teaching Hospital
- Ngozi I. Ugwu
- Haematology Department, Alex Ekwueme Federal University Teaching Hospital
- Chukwuyem Abejegah
- Federal Medical Center
- Nelson Adedosu
- Federal Medical Center
- Olufemi Ayodeji
- Federal Medical Center
- Ahmed A. Liasu
- Federal Medical Center
- Rafiu O. Isamotu
- Ministry of Health
- Galadima Gadzama
- Department of Medical Microbiology, University of Maiduguri Teaching Hospital
- Brittany A. Petros
- Broad Institute of Harvard and MIT
- Katherine J. Siddle
- Broad Institute of Harvard and MIT
- Stephen F. Schaffner
- Broad Institute of Harvard and MIT
- George Akpede
- Irrua Specialist Teaching Hospital
- Cyril Oshomah Erameh
- Irrua Specialist Teaching Hospital
- Marycelin M. Baba
- WHO Polio Laboratory, University of Maiduguri Teaching Hospital
- Femi Oladiji
- Department of Epidemiology and Community Health, Faculty of Clinical Sciences, College of Health Sciences, University of Ilorin
- Rosemary Audu
- The Nigerian Institute of Medical Research
- Nnaemeka Ndodo
- Nigeria Centre for Disease Control
- Adeola Fowotade
- Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital
- Sylvanus Okogbenin
- Irrua Specialist Teaching Hospital
- Peter O. Okokhere
- Irrua Specialist Teaching Hospital
- Danny J. Park
- Broad Institute of Harvard and MIT
- Bronwyn L. Mcannis
- Broad Institute of Harvard and MIT
- Ifedayo M. Adetifa
- Nigeria Centre for Disease Control
- Chikwe Ihekweazu
- Nigeria Centre for Disease Control
- Babatunde L. Salako
- The Nigerian Institute of Medical Research
- Oyewale Tomori
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Anise N. Happi
- African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University
- Onikepe A. Folarin
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- Kristian G. Andersen
- Department of Immunology and Microbiology, The Scripps Research Institute
- Pardis C. Sabeti
- Broad Institute of Harvard and MIT
- Christian T. Happi
- Department of Biological Sciences, Faculty of Natural Sciences, Redeemer’s University
- DOI
- https://doi.org/10.1038/s41467-023-36449-5
- Journal volume & issue
-
Vol. 14,
no. 1
pp. 1 – 10
Abstract
Data on geographically restricted SARS-CoV-2 variants is lacking in some regions. In this nationwide effort including 18 public health labs, the authors used genomic epidemiology and travel data to understand the origin and spread of 2 variants of interest that predominated during the second wave of the pandemic in Nigeria.