Cells (Nov 2023)

circRNA-miRNA-mRNA Deregulated Network in Ischemic Heart Failure Patients

  • Alisia Madè,
  • Alessia Bibi,
  • Jose Manuel Garcia-Manteiga,
  • Anna Sofia Tascini,
  • Santiago Nicolas Piella,
  • Roman Tikhomirov,
  • Christine Voellenkle,
  • Carlo Gaetano,
  • Przemyslaw Leszek,
  • Serenella Castelvecchio,
  • Lorenzo Menicanti,
  • Fabio Martelli,
  • Simona Greco

DOI
https://doi.org/10.3390/cells12212578
Journal volume & issue
Vol. 12, no. 21
p. 2578

Abstract

Read online

Noncoding RNAs (ncRNAs), which include circular RNAs (circRNAs) and microRNAs (miRNAs), regulate the development of cardiovascular diseases (CVD). Notably, circRNAs can interact with miRNAs, influencing their specific mRNA targets’ levels and shaping a competing endogenous RNAs (ceRNA) network. However, these interactions and their respective functions remain largely unexplored in ischemic heart failure (IHF). This study is aimed at identifying circRNA-centered ceRNA networks in non-end-stage IHF. Approximately 662 circRNA-miRNA-mRNA interactions were identified in the heart by combining state-of-the-art bioinformatics tools with experimental data. Importantly, KEGG terms of the enriched mRNA indicated CVD-related signaling pathways. A specific network centered on circBPTF was validated experimentally. The levels of let-7a-5p, miR-18a-3p, miR-146b-5p, and miR-196b-5p were enriched in circBPTF pull-down experiments, and circBPTF silencing inhibited the expression of HDAC9 and LRRC17, which are targets of miR-196b-5p. Furthermore, as suggested by the enriched pathway terms of the circBPTF ceRNA network, circBPTF inhibition elicited endothelial cell cycle arrest. circBPTF expression increased in endothelial cells exposed to hypoxia, and its upregulation was confirmed in cardiac samples of 36 end-stage IHF patients compared to healthy controls. In conclusion, circRNAs act as miRNA sponges, regulating the functions of multiple mRNA targets, thus providing a novel vision of HF pathogenesis and laying the theoretical foundation for further experimental studies.

Keywords