Mathematical Programming in Computational Biology: an Annotated Bibliography

Abstract

The field of computational biology has experienced a tremendous growth in the past 15 years. In this bibliography, we survey some of the most significant contributions that were made to the field and which employ mathematical programming techniques, while giving a broad overview of application areas of modern computational molecular biology. The areas include sequence analysis, microarrays, protein structure and function, haplotyping and evolutionary distances.

Keywords

• Mathematical Programming
• Integer Programming
• Linear Programming
• Computational Biology
• Bioinformatics
• Sequencing
• Haplotyping
• Protein Structures