Nature Communications (Jul 2022)

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk

  • Xin Shao,
  • Chengyu Li,
  • Haihong Yang,
  • Xiaoyan Lu,
  • Jie Liao,
  • Jingyang Qian,
  • Kai Wang,
  • Junyun Cheng,
  • Penghui Yang,
  • Huajun Chen,
  • Xiao Xu,
  • Xiaohui Fan

DOI
https://doi.org/10.1038/s41467-022-32111-8
Journal volume & issue
Vol. 13, no. 1
pp. 1 – 15

Abstract

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Cell-cell communication is a vital feature involving numerous biological processes. Here, the authors develop SpaTalk, a cell-cell communication inference method using knowledge graph for spatially resolved transcriptomic data, providing valuable insights into spatial intercellular tissue dynamics.