Nature Communications (Jun 2022)

Integrating 3D genomic and epigenomic data to enhance target gene discovery and drug repurposing in transcriptome-wide association studies

  • Chachrit Khunsriraksakul,
  • Daniel McGuire,
  • Renan Sauteraud,
  • Fang Chen,
  • Lina Yang,
  • Lida Wang,
  • Jordan Hughey,
  • Scott Eckert,
  • J. Dylan Weissenkampen,
  • Ganesh Shenoy,
  • Olivia Marx,
  • Laura Carrel,
  • Bibo Jiang,
  • Dajiang J. Liu

DOI
https://doi.org/10.1038/s41467-022-30956-7
Journal volume & issue
Vol. 13, no. 1
pp. 1 – 15

Abstract

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Transcriptome-wide association studies can be used to test the effects of predicted gene expression in a cohort of individuals based on genetic data. Here, the authors developed a transcriptome-wide association method that integrates 3D genomic and epigenomic data with expression quantitative trait loci to improve gene expression predictions.