Advances in spiral fMRI: A high-resolution study with single-shot acquisition
Lars Kasper,
Maria Engel,
Jakob Heinzle,
Matthias Mueller-Schrader,
Nadine N. Graedel,
Jonas Reber,
Thomas Schmid,
Christoph Barmet,
Bertram J. Wilm,
Klaas Enno Stephan,
Klaas P. Pruessmann
Affiliations
Lars Kasper
Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland; Translational Neuromodeling Unit, Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Wilfriedstrasse 6, Zurich 8032, Switzerland; Corresponding author at: Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland.
Maria Engel
Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland
Jakob Heinzle
Translational Neuromodeling Unit, Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Wilfriedstrasse 6, Zurich 8032, Switzerland
Matthias Mueller-Schrader
Translational Neuromodeling Unit, Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Wilfriedstrasse 6, Zurich 8032, Switzerland
Nadine N. Graedel
Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland; Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK
Jonas Reber
Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland
Thomas Schmid
Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland
Christoph Barmet
Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland
Bertram J. Wilm
Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland
Klaas Enno Stephan
Translational Neuromodeling Unit, Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Wilfriedstrasse 6, Zurich 8032, Switzerland; Wellcome Centre for Human Neuroimaging, University College London, London WC1N 3BG, UK; Max Planck Institute for Metabolism Research, Cologne 50931, Germany
Klaas P. Pruessmann
Institute for Biomedical Engineering, ETH Zurich and University of Zurich, Gloriastrasse 35, Zurich 8092, Switzerland
Spiral fMRI has been put forward as a viable alternative to rectilinear echo-planar imaging, in particular due to its enhanced average k-space speed and thus high acquisition efficiency. This renders spirals attractive for contemporary fMRI applications that require high spatiotemporal resolution, such as laminar or columnar fMRI. However, in practice, spiral fMRI is typically hampered by its reduced robustness and ensuing blurring artifacts, which arise from imperfections in both static and dynamic magnetic fields.Recently, these limitations have been overcome by the concerted application of an expanded signal model that accounts for such field imperfections, and its inversion by iterative image reconstruction. In the challenging ultra-high field environment of 7 Tesla, where field inhomogeneity effects are aggravated, both multi-shot and single-shot 2D spiral imaging at sub-millimeter resolution was demonstrated with high depiction quality and anatomical congruency.In this work, we further these advances towards a time series application of spiral readouts, namely, single-shot spiral BOLD fMRI at 0.8 mm in-plane resolution. We demonstrate that high-resolution spiral fMRI at 7 T is not only feasible, but delivers both excellent image quality, BOLD sensitivity, and spatial specificity of the activation maps, with little artifactual blurring. Furthermore, we show the versatility of the approach with a combined in/out spiral readout at a more typical resolution (1.5 mm), where the high acquisition efficiency allows to acquire two images per shot for improved sensitivity by echo combination.