Data on whole genome sequencing of extrapulmonary tuberculosis clinical isolates from India
Jayshree Advani,
Kusum Sharma,
Renu Verma,
Oishi Chatterjee,
Hitendra S. Solanki,
Aman Sharma,
Subhash Varma,
Manish Modi,
Pallab Ray,
Megha Sharma,
M.S. Dhillion,
Akhilesh Pandey,
Harsha Gowda,
T.S. Keshava Prasad
Affiliations
Jayshree Advani
Institute of Bioinformatics, International Technology Park, Bangalore 560066, India; Manipal Academy of Higher Education, Manipal, Karnataka 576104, India
Kusum Sharma
Department of Medical Microbiology, PGIMER, Chandigarh 160012, India; Corresponding author.
Renu Verma
Institute of Bioinformatics, International Technology Park, Bangalore 560066, India
Oishi Chatterjee
Institute of Bioinformatics, International Technology Park, Bangalore 560066, India; School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam, Kerala 690525, India; Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India
Hitendra S. Solanki
Institute of Bioinformatics, International Technology Park, Bangalore 560066, India; School of Biotechnology, KIIT University, Bhubaneswar, Odisha 751024, India
Aman Sharma
Department of Internal Medicine, PGIMER, Chandigarh 160012, India
Subhash Varma
Department of Internal Medicine, PGIMER, Chandigarh 160012, India
Manish Modi
Department of Neurology, PGIMER, Chandigarh 160012, India
Pallab Ray
Department of Medical Microbiology, PGIMER, Chandigarh 160012, India
Megha Sharma
Department of Medical Microbiology, PGIMER, Chandigarh 160012, India
M.S. Dhillion
Department of Orthopedics, PGIMER, Chandigarh 160012, India
Akhilesh Pandey
Institute of Bioinformatics, International Technology Park, Bangalore 560066, India; Manipal Academy of Higher Education, Manipal, Karnataka 576104, India; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
Harsha Gowda
Institute of Bioinformatics, International Technology Park, Bangalore 560066, India
T.S. Keshava Prasad
Institute of Bioinformatics, International Technology Park, Bangalore 560066, India; Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India; Corresponding author at: Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya (Deemed to be University), University Road, Mangalore 575018, India.
This article describes the whole genome sequencing data from 5 extrapulmonary tuberculosis clinical isolates. The whole genome sequencing was carried out on Illumina MiSeq platform to identify single nucleotide variations (SNVs) associated with drug resistance. A total of 214 SNVs in the coding and promoter regions were identified in the whole genome sequencing analysis. Among the identified SNVs, 18 SNVs were identified in genes known to be associated with first and second line drug resistance. The data is related to the research article “Whole genome sequencing of Mycobacterium tuberculosis isolates from extrapulmonary sites” (Sharma et al., 2017) [1].
