An open codebase for enhancing transparency in deep learning-based breast cancer diagnosis utilizing CBIS-DDSM data

Abstract

Abstract Accessible mammography datasets and innovative machine learning techniques are at the forefront of computer-aided breast cancer diagnosis. However, the opacity surrounding private datasets and the unclear methodology behind the selection of subset images from publicly available databases for model training and testing, coupled with the arbitrary incompleteness or inaccessibility of code, markedly intensifies the obstacles in replicating and validating the model's efficacy. These challenges, in turn, erect barriers for subsequent researchers striving to learn and advance this field. To address these limitations, we provide a pilot codebase covering the entire process from image preprocessing to model development and evaluation pipeline, utilizing the publicly available Curated Breast Imaging Subset of Digital Database for Screening Mammography (CBIS-DDSM) mass subset, including both full images and regions of interests (ROIs). We have identified that increasing the input size could improve the detection accuracy of malignant cases within each set of models. Collectively, our efforts hold promise in accelerating global software development for breast cancer diagnosis by leveraging our codebase and structure, while also integrating other advancements in the field.