Scientific Data (May 2024)
From Planning Stage Towards FAIR Data: A Practical Metadatasheet For Biomedical Scientists
- Lea Seep,
- Stephan Grein,
- Iva Splichalova,
- Danli Ran,
- Mickel Mikhael,
- Staffan Hildebrand,
- Mario Lauterbach,
- Karsten Hiller,
- Dalila Juliana Silva Ribeiro,
- Katharina Sieckmann,
- Ronja Kardinal,
- Hao Huang,
- Jiangyan Yu,
- Sebastian Kallabis,
- Janina Behrens,
- Andreas Till,
- Viktoriya Peeva,
- Akim Strohmeyer,
- Johanna Bruder,
- Tobias Blum,
- Ana Soriano-Arroquia,
- Dominik Tischer,
- Katharina Kuellmer,
- Yuanfang Li,
- Marc Beyer,
- Anne-Kathrin Gellner,
- Tobias Fromme,
- Henning Wackerhage,
- Martin Klingenspor,
- Wiebke K. Fenske,
- Ludger Scheja,
- Felix Meissner,
- Andreas Schlitzer,
- Elvira Mass,
- Dagmar Wachten,
- Eicke Latz,
- Alexander Pfeifer,
- Jan Hasenauer
Affiliations
- Lea Seep
- Computational Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn
- Stephan Grein
- Computational Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn
- Iva Splichalova
- Developmental Biology of the Immune System, Life & Medical Sciences (LIMES) Institute, University of Bonn
- Danli Ran
- Institute of Pharmacology and Toxicology, University Hospital, University of Bonn
- Mickel Mikhael
- Institute of Pharmacology and Toxicology, University Hospital, University of Bonn
- Staffan Hildebrand
- Institute of Pharmacology and Toxicology, University Hospital, University of Bonn
- Mario Lauterbach
- Department of Bioinformatics and Biochemistry, Technical University Braunschweig
- Karsten Hiller
- Department of Bioinformatics and Biochemistry, Technical University Braunschweig
- Dalila Juliana Silva Ribeiro
- Institute of Innate Immunity, University Hospital Bonn, University of Bonn
- Katharina Sieckmann
- Institute of Innate Immunity, University Hospital Bonn, University of Bonn
- Ronja Kardinal
- Institute of Innate Immunity, University Hospital Bonn, University of Bonn
- Hao Huang
- Developmental Biology of the Immune System, Life & Medical Sciences (LIMES) Institute, University of Bonn
- Jiangyan Yu
- Computational Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn
- Sebastian Kallabis
- Systems Immunology and Proteomics, Institute of Innate Immunity, Medical Faculty, University of Bonn
- Janina Behrens
- Department of Biochemistry and Molecular Cell Biology, University Medical Center Hamburg-Eppendorf
- Andreas Till
- Department of Internal Medicine I, Division of Endocrinology, Diabetes and Metabolism, University Medical Center Bonn
- Viktoriya Peeva
- Department of Internal Medicine I, Division of Endocrinology, Diabetes and Metabolism, University Medical Center Bonn
- Akim Strohmeyer
- Chair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich
- Johanna Bruder
- Chair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich
- Tobias Blum
- Immunology and Environment, Life & Medical Sciences (LIMES) Institute, University of Bonn
- Ana Soriano-Arroquia
- Institute of Pharmacology and Toxicology, University Hospital, University of Bonn
- Dominik Tischer
- Institute of Pharmacology and Toxicology, University Hospital, University of Bonn
- Katharina Kuellmer
- Chair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich
- Yuanfang Li
- Immunogenomics & Neurodegeneration, German Center for Neurodegenerative Diseases (DZNE)
- Marc Beyer
- Immunogenomics & Neurodegeneration, German Center for Neurodegenerative Diseases (DZNE)
- Anne-Kathrin Gellner
- Department of Psychiatry and Psychotherapy, University Hospital Bonn
- Tobias Fromme
- Chair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich
- Henning Wackerhage
- School for Medicine and Health, Faculty of Sport and Health Sciences, Technical University of Munich
- Martin Klingenspor
- Chair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich
- Wiebke K. Fenske
- Department of Internal Medicine I, Division of Endocrinology, Diabetes and Metabolism, University Medical Center Bonn
- Ludger Scheja
- Department of Biochemistry and Molecular Cell Biology, University Medical Center Hamburg-Eppendorf
- Felix Meissner
- Systems Immunology and Proteomics, Institute of Innate Immunity, Medical Faculty, University of Bonn
- Andreas Schlitzer
- Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn
- Elvira Mass
- Developmental Biology of the Immune System, Life & Medical Sciences (LIMES) Institute, University of Bonn
- Dagmar Wachten
- Institute of Innate Immunity, University Hospital Bonn, University of Bonn
- Eicke Latz
- Institute of Innate Immunity, University Hospital Bonn, University of Bonn
- Alexander Pfeifer
- Institute of Pharmacology and Toxicology, University Hospital, University of Bonn
- Jan Hasenauer
- Computational Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn
- DOI
- https://doi.org/10.1038/s41597-024-03349-2
- Journal volume & issue
-
Vol. 11,
no. 1
pp. 1 – 14
Abstract
Abstract Datasets consist of measurement data and metadata. Metadata provides context, essential for understanding and (re-)using data. Various metadata standards exist for different methods, systems and contexts. However, relevant information resides at differing stages across the data-lifecycle. Often, this information is defined and standardized only at publication stage, which can lead to data loss and workload increase. In this study, we developed Metadatasheet, a metadata standard based on interviews with members of two biomedical consortia and systematic screening of data repositories. It aligns with the data-lifecycle allowing synchronous metadata recording within Microsoft Excel, a widespread data recording software. Additionally, we provide an implementation, the Metadata Workbook, that offers user-friendly features like automation, dynamic adaption, metadata integrity checks, and export options for various metadata standards. By design and due to its extensive documentation, the proposed metadata standard simplifies recording and structuring of metadata for biomedical scientists, promoting practicality and convenience in data management. This framework can accelerate scientific progress by enhancing collaboration and knowledge transfer throughout the intermediate steps of data creation.