Field programmable gate arrays (FPGAs) have not only enhanced traditional sensing methods, such as pixel detection (CCD and CMOS), but also enabled the development of innovative approaches with significant potential for particle detection. This is particularly relevant in terahertz (THz) ray detection, where microbolometer-based focal plane arrays (FPAs) using microelectromechanical (MEMS) resonators are among the most promising solutions. Designing high-performance, high-pixel-density sensors is challenging without FPGAs, which are crucial for deterministic parallel processing, fast ADC/DAC control, and handling large data throughput. This paper presents a MEMS-resonator detector, fully managed via an FPGA, capable of controlling pixel excitation and tracking resonance-frequency shifts due to radiation using parallel digital lock-in amplifiers. The innovative FPGA architecture, based on a lock-in matrix, enhances the open-loop readout technique by a factor of 32. Measurements were performed on a frequency-multiplexed, 256-pixel sensor designed for imaging applications.