Whole Genome Sequencing Suggests that “Nonpathogenicity on Banana (NPB)” Is the Ancestral State of the Ralstonia solanacearum IIB-4 Lineage

Abstract

The bacterial wilt pathogens in the Ralstonia solanacearum species complex (RSSC) have broad but finite host ranges. Population genetic surveys of RSSC pathogens show that many sequevars (subspecies groups) are predominantly recovered from wilting solanaceous plants. In contrast, strains in the IIB-4 sequevar have been isolated from plants in over a dozen families. Certain IIB-4 lineages have been classified as banana-virulent versus “not pathogenic to banana (NPB).” Prior analysis suggested that the NPB lineage has diverged from the banana-virulent IIB-4 strains. To test this model, we analyzed the phenotypes and phylogeny of a diverse collection of 19 IIB-4 isolates. We used Illumina sequencing to assemble draft genomes of 12 new strains. Based on whole genome phylogenetic analysis, these IIB-4 strains clustered into five subclades. We quantified the virulence of each strain on tomato, banana, melon, and impatiens plants. Overall, the virulence patterns correlated with phylogeny. Banana virulence was restricted to the IIB-4D subclade (N = 4/4 strains) and IIB-4E subclade (N = 1/2 strains). Subclades IIB-4D and IIB-4E are sister subclades, and their closest relative, the IIB-4A-C subclade, lacked virulence on banana. Our data support a revised model in which banana virulence is an innovation within the IIB4D/E subclades. [Figure: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.

Keywords

• bacterial pathogens
• genomics
• host range
• Ralstonia IIB-4
• Ralstonia solanacearum species complex