Complete genome sequencing and BGLU gene family analysis of Angelica dahurica

Abstract

Angelica dahurica is a common species of medicine and food homology, which is not only a common clinical traditional Chinese medicine, but also a spice, with a wide range of uses. In order to obtain the whole genome sequence information of A. dahurica, we used A. dahurica var. formosana leaf DNA as material, and the Nanopore sequencing technology was used to establish its nucleotide sequences database, then genome assembly, function annotation and evolution analysis were carried out by bioinformatic methods. The results were as follows:(1) A total of 662 Gb of the third-generation data were obtained after fittering the original sequencing data, with the Read N50 about 32 932 bp. The assembled A. dahurica genome size was 5.6 Gb, Contig N50 was about 806 638 bp. (2) The genes were with gene annotations accounted for 66.47% after being compared with functional databases such as NR, KOG and KEGG. The result of KOG gene annotation was that the protein function of A. dahurica concentrated in the general functional prediction, posttranslational modification, protein turnover, chaperones and signal transduction mechanisms. GO functional classification indicated that the genes of A. dahurica concentrated on cell biological processes and components. KEGG analysis found that the A. dahurica genes mostly involved in metabolic pathways. (3) And 45 genes of BGLU family were identified in A. dahurica. In this study, the whole genome of A. dahurica is resolved by the third-generation sequencing technology for the first time, which provides important theoretical references for the systematic biological study and the further study of the function of BGLU in the growth and development of A. dahurica.

Keywords

• angelica dahurica var. formosana
• genome
• the third-generation sequencing technology
• bglu gene family
• medicinal plant