IMA Fungus (Dec 2018)
Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans
- Brenda D. Wingfield,
- Miao Liu,
- Hai D. T. Nguyen,
- Frances A. Lane,
- Seamus W. Morgan,
- Lieschen De Vos,
- P. Markus Wilken,
- Tuan A. Duong,
- Janneke Aylward,
- Martin P. A. Coetzee,
- Kasia Dadej,
- Z. Wilhelm De Beer,
- Wendy Findlay,
- Minette Havenga,
- Miroslav Kolařík,
- Jim G. Menzies,
- Kershney Naidoo,
- Olivia Pochopski,
- Parivash Shoukouhi,
- Quentin C. Santana,
- Keith A. Seifert,
- Nicole Soal,
- Emma T. Steenkamp,
- Catherine T. Tatham,
- Margriet A. van der Nest,
- Michael J. Wingfield
Affiliations
- Brenda D. Wingfield
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Miao Liu
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada
- Hai D. T. Nguyen
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada
- Frances A. Lane
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Seamus W. Morgan
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Lieschen De Vos
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- P. Markus Wilken
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Tuan A. Duong
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Janneke Aylward
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Martin P. A. Coetzee
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Kasia Dadej
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada
- Z. Wilhelm De Beer
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Wendy Findlay
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada
- Minette Havenga
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Miroslav Kolařík
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Academy of Sciences of Czech Republic
- Jim G. Menzies
- Morden Research and Development Centre, Agriculture and Agri-Food Canada
- Kershney Naidoo
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Olivia Pochopski
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada
- Parivash Shoukouhi
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada
- Quentin C. Santana
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Keith A. Seifert
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada
- Nicole Soal
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Emma T. Steenkamp
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Catherine T. Tatham
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Margriet A. van der Nest
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- Michael J. Wingfield
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
- DOI
- https://doi.org/10.5598/imafungus.2018.09.02.10
- Journal volume & issue
-
Vol. 9,
no. 2
pp. 401 – 418
Abstract
Abstract This genome announcement includes draft genomes from Claviceps purpurea s.lat., including C. arundinis, C. humidiphila and C. cf. spartinae. The draft genomes of Davidsoniella eucalypti, Quambalaria eucalypti and Teratosphaeria destructans, all three important eucalyptus pathogens, are presented. The insect associate Grosmannia galeiformis is also described. The pine pathogen genome of Fusarium circinatum has been assembled into pseudomolecules, based on additional sequence data and by harnessing the known synteny within the Fusarium fujikuroi species complex. This new assembly of the F. circinatum genome provides 12 pseudomolecules that correspond to the haploid chromosome number of F. circinatum. These are comparable to other chromosomal assemblies within the FFSC and will enable more robust genomic comparisons within this species complex.
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