Data in Brief (Oct 2018)

Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)

  • Zachary M. Turpin,
  • Daniel L. Vera,
  • Savannah D. Savadel,
  • Pei-Yau Lung,
  • Emily E. Wear,
  • Leigh Mickelson-Young,
  • William F. Thompson,
  • Linda Hanley-Bowdoin,
  • Jonathan H. Dennis,
  • Jinfeng Zhang,
  • Hank W. Bass

Journal volume & issue
Vol. 20
pp. 358 – 363

Abstract

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Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (Zea mays) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data processing pipeline for producing genome browser tracks. This report also includes the peak-calling pipeline using the iSeg algorithm to segment positive and negative peaks from the DNS-seq difference profiles. The data repository for the sequence data is the NCBI SRA, BioProject Accession PRJNA445708.