eLife (Aug 2022)
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
- Daniel J Richter,
- Romain Watteaux,
- Thomas Vannier,
- Jade Leconte,
- Paul Frémont,
- Gabriel Reygondeau,
- Nicolas Maillet,
- Nicolas Henry,
- Gaëtan Benoit,
- Ophélie Da Silva,
- Tom O Delmont,
- Antonio Fernàndez-Guerra,
- Samir Suweis,
- Romain Narci,
- Cédric Berney,
- Damien Eveillard,
- Frederick Gavory,
- Lionel Guidi,
- Karine Labadie,
- Eric Mahieu,
- Julie Poulain,
- Sarah Romac,
- Simon Roux,
- Céline Dimier,
- Stefanie Kandels,
- Marc Picheral,
- Sarah Searson,
- Tara Oceans Coordinators,
- Stéphane Pesant,
- Jean-Marc Aury,
- Jennifer R Brum,
- Claire Lemaitre,
- Eric Pelletier,
- Peer Bork,
- Shinichi Sunagawa,
- Fabien Lombard,
- Lee Karp-Boss,
- Chris Bowler,
- Matthew B Sullivan,
- Eric Karsenti,
- Mahendra Mariadassou,
- Ian Probert,
- Pierre Peterlongo,
- Patrick Wincker,
- Colomban de Vargas,
- Maurizio Ribera d'Alcalà,
- Daniele Iudicone,
- Olivier Jaillon
Affiliations
- Daniel J Richter
- ORCiD
- Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France; Institut de Biologia Evolutiva (CSIC‐Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
- Romain Watteaux
- Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy; CEA, DAM, DIF, F‐91297, Arpajon Cedex, France
- Thomas Vannier
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Aix Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM, Marseille, France
- Jade Leconte
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Paul Frémont
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Gabriel Reygondeau
- Changing Ocean Research Unit, Institute for the Oceans and Fisheries, University of British Columbia. Aquatic Ecosystems Research Lab, Vancouver, Canada; Ecology and Evolutionary Biology, Yale University, New Haven, CT, United States
- Nicolas Maillet
- Institut pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, Paris, France
- Nicolas Henry
- ORCiD
- Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Gaëtan Benoit
- Univ Rennes, CNRS, Inria, IRISA-UMR 6074, Rennes, France
- Ophélie Da Silva
- Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Sorbonne Universités, CNRS, Laboratoire d’Oceanographie de Villefranche, LOV, Villefranche‐sur‐Mer, France
- Tom O Delmont
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Antonio Fernàndez-Guerra
- ORCiD
- Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark; MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany; Max Planck Institute for Marine Microbiology, Bremen, Germany
- Samir Suweis
- Dipartimento di Fisica e Astronomia ‘G. Galilei’ & CNISM, INFN, Università di Padova, Padova, Italy
- Romain Narci
- MaIAGE, INRAE, Université Paris‐Saclay, Jouy‐en‐Josas, France
- Cédric Berney
- ORCiD
- Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Damien Eveillard
- ORCiD
- Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Nantes Université, Ecole Centrale Nantes, CNRS, LS2N, Nantes, France
- Frederick Gavory
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France
- Lionel Guidi
- ORCiD
- Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Sorbonne Universités, CNRS, Laboratoire d’Oceanographie de Villefranche, LOV, Villefranche‐sur‐Mer, France
- Karine Labadie
- Genoscope, Institut de biologie François‐Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris‐Saclay, Evry, France
- Eric Mahieu
- Genoscope, Institut de biologie François‐Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris‐Saclay, Evry, France
- Julie Poulain
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Sarah Romac
- Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Simon Roux
- Department of Microbiology, The Ohio State University, Columbus, United States
- Céline Dimier
- Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France; Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
- Stefanie Kandels
- Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany; Directors’ Research European Molecular Biology Laboratory, Heidelberg, Germany
- Marc Picheral
- Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Sorbonne Universités, CNRS, Laboratoire d’Oceanographie de Villefranche, LOV, Villefranche‐sur‐Mer, France
- Sarah Searson
- ORCiD
- Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Sorbonne Universités, CNRS, Laboratoire d’Oceanographie de Villefranche, LOV, Villefranche‐sur‐Mer, France
- Tara Oceans Coordinators
- Stéphane Pesant
- MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany; PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen, Bremen, Germany
- Jean-Marc Aury
- ORCiD
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France
- Jennifer R Brum
- Department of Microbiology, The Ohio State University, Columbus, United States; Department of Oceanography and Coastal Sciences, Louisiana State University, Baton Rouge, United States
- Claire Lemaitre
- Univ Rennes, CNRS, Inria, IRISA-UMR 6074, Rennes, France
- Eric Pelletier
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Peer Bork
- Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany; Yonsei Frontier Lab, Yonsei University, Seoul, Republic of Korea; Department of Bioinformatics, Biocenter, University of Würzburg, Würzburg, Germany
- Shinichi Sunagawa
- ORCiD
- Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany; Institute of Microbiology, Department of Biology, ETH Zurich, Vladimir‐Prelog‐Weg, Zurich, Switzerland
- Fabien Lombard
- Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Sorbonne Universités, CNRS, Laboratoire d’Oceanographie de Villefranche, LOV, Villefranche‐sur‐Mer, France; Institut Universitaire de France (IUF), Paris, France
- Lee Karp-Boss
- School of Marine Sciences, University of Maine, Orono, United States
- Chris Bowler
- ORCiD
- Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France; Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
- Matthew B Sullivan
- Department of Microbiology, The Ohio State University, Columbus, United States; EMERGE Biology Integration Institute, The Ohio State University, Columbus, United States; Center of Microbiome Science, The Ohio State University, Columbus, United States; Department of Civil, Environmental and Geodetic Engineering, The Ohio State University, Columbus, United States
- Eric Karsenti
- Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France; Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France; Directors’ Research European Molecular Biology Laboratory, Heidelberg, Germany
- Mahendra Mariadassou
- MaIAGE, INRAE, Université Paris‐Saclay, Jouy‐en‐Josas, France
- Ian Probert
- ORCiD
- Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Pierre Peterlongo
- Univ Rennes, CNRS, Inria, IRISA-UMR 6074, Rennes, France
- Patrick Wincker
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Colomban de Vargas
- ORCiD
- Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, ECOMAP, Roscoff, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- Maurizio Ribera d'Alcalà
- Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy
- Daniele Iudicone
- Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy
- Olivier Jaillon
- ORCiD
- Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université Evry, Université Paris‐Saclay, Evry, France; Research Federation for the study of Global Ocean systems ecology and evolution, FR2O22/Tara GOSEE, Paris, France
- DOI
- https://doi.org/10.7554/eLife.78129
- Journal volume & issue
-
Vol. 11
Abstract
Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long been debated. Here we assessed the global structure of plankton geography and its relation to the biological, chemical, and physical context of the ocean (the ‘seascape’) by analyzing metagenomes of plankton communities sampled across oceans during the Tara Oceans expedition, in light of environmental data and ocean current transport. Using a consistent approach across organismal sizes that provides unprecedented resolution to measure changes in genomic composition between communities, we report a pan-ocean, size-dependent plankton biogeography overlying regional heterogeneity. We found robust evidence for a basin-scale impact of transport by ocean currents on plankton biogeography, and on a characteristic timescale of community dynamics going beyond simple seasonality or life history transitions of plankton.
Keywords