iScience (Apr 2024)

Machine learning unveils immune-related signature in multicenter glioma studies

  • Sha Yang,
  • Xiang Wang,
  • Renzheng Huan,
  • Mei Deng,
  • Zhuo Kong,
  • Yunbiao Xiong,
  • Tao Luo,
  • Zheng Jin,
  • Jian Liu,
  • Liangzhao Chu,
  • Guoqiang Han,
  • Jiqin Zhang,
  • Ying Tan

Journal volume & issue
Vol. 27, no. 4
p. 109317

Abstract

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Summary: In glioma molecular subtyping, existing biomarkers are limited, prompting the development of new ones. We present a multicenter study-derived consensus immune-related and prognostic gene signature (CIPS) using an optimal risk score model and 101 algorithms. CIPS, an independent risk factor, showed stable and powerful predictive performance for overall and progression-free survival, surpassing traditional clinical variables. The risk score correlated significantly with the immune microenvironment, indicating potential sensitivity to immunotherapy. High-risk groups exhibited distinct chemotherapy drug sensitivity. Seven signature genes, including IGFBP2 and TNFRSF12A, were validated by qRT-PCR, with higher expression in tumors and prognostic relevance. TNFRSF12A, upregulated in GBM, demonstrated inhibitory effects on glioma cell proliferation, migration, and invasion. CIPS emerges as a robust tool for enhancing individual glioma patient outcomes, while IGFBP2 and TNFRSF12A pose as promising tumor markers and therapeutic targets.

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