Nature Communications (May 2017)
Sequencing and de novo assembly of a near complete indica rice genome
- Huilong Du,
- Ying Yu,
- Yanfei Ma,
- Qiang Gao,
- Yinghao Cao,
- Zhuo Chen,
- Bin Ma,
- Ming Qi,
- Yan Li,
- Xianfeng Zhao,
- Jing Wang,
- Kunfan Liu,
- Peng Qin,
- Xin Yang,
- Lihuang Zhu,
- Shigui Li,
- Chengzhi Liang
Affiliations
- Huilong Du
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Ying Yu
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Yanfei Ma
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Qiang Gao
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Yinghao Cao
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Zhuo Chen
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Bin Ma
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Ming Qi
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Yan Li
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Xianfeng Zhao
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Jing Wang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Kunfan Liu
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Peng Qin
- Rice Research Institute, Sichuan Agricultural University
- Xin Yang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Lihuang Zhu
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Shigui Li
- Rice Research Institute, Sichuan Agricultural University
- Chengzhi Liang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- DOI
- https://doi.org/10.1038/ncomms15324
- Journal volume & issue
-
Vol. 8,
no. 1
pp. 1 – 12
Abstract
High-quality reference genomes facilitate analysis of genome structure and variation. Here Duet al. create a near-complete assembly of the indicarice genome by combining single molecule sequencing with mapping data and fosmid sequences and identify genetic variants by comparison with other rice genomes.
