Nature Communications (Apr 2020)

Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines

  • Eddie Cano-Gamez,
  • Blagoje Soskic,
  • Theodoros I. Roumeliotis,
  • Ernest So,
  • Deborah J. Smyth,
  • Marta Baldrighi,
  • David Willé,
  • Nikolina Nakic,
  • Jorge Esparza-Gordillo,
  • Christopher G. C. Larminie,
  • Paola G. Bronson,
  • David F. Tough,
  • Wendy C. Rowan,
  • Jyoti S. Choudhary,
  • Gosia Trynka

DOI
https://doi.org/10.1038/s41467-020-15543-y
Journal volume & issue
Vol. 11, no. 1
pp. 1 – 15

Abstract

Read online

Cytokines critically control the differentiation and functions of activated naïve and memory T cells. Here the authors show, using multi-omics and single-cell analyses, that naïve and memory T cells exhibit distinct cytokine responses, in which an ‘effectorness gradient’ is depicted by a transcriptional continuum, which shapes the downstream genetic programs.