Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

Schreiber Falk; Sommer Björn; Bader Gary D.; Gleeson Padraig; Golebiewski Martin; Hucka Michael; Keating Sarah M.; König Matthias; Myers Chris; Nickerson David; Waltemath Dagmar

doi:10.1515/jib-2019-0035

Journal of Integrative Bioinformatics (Jul 2019)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

Schreiber Falk,
Sommer Björn,
Bader Gary D.,
Gleeson Padraig,
Golebiewski Martin,
Hucka Michael,
Keating Sarah M.,
König Matthias,
Myers Chris,
Nickerson David,
Waltemath Dagmar

Affiliations

Schreiber Falk: Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
Sommer Björn: Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
Bader Gary D.: The Donnelly Centre, University of Toronto, Toronto, Canada
Gleeson Padraig: Department of Neuroscience, Physiology and Pharmacology, University College London, London, UK
Golebiewski Martin: Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany
Hucka Michael: California Institute of Technology, Pasadena, CA, USA
Keating Sarah M.: Heidelberg University, Heidelberg, Germany
König Matthias: Humboldt-University Berlin, Berlin, Germany
Myers Chris: University of Utah, Salt Late City, UT, USA
Nickerson David: Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
Waltemath Dagmar: University Medicine Greifswald, Greifswald, Germany

DOI: https://doi.org/10.1515/jib-2019-0035
Journal volume & issue: Vol. 16, no. 2
pp. 19 – 95

Abstract

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This special issue of the Journal of Integrative Bioinformatics presents an overview of COMBINE standards and their latest specifications. The standards cover representation formats for computational modeling in synthetic and systems biology and include BioPAX, CellML, NeuroML, SBML, SBGN, SBOL and SED-ML. The articles in this issue contain updated specifications of SBGN Process Description Level 1 Version 2, SBML Level 3 Core Version 2 Release 2, SBOL Version 2.3.0, and SBOL Visual Version 2.1.

Published in Journal of Integrative Bioinformatics

ISSN: 1613-4516 (Online)
Publisher: De Gruyter
Country of publisher: Germany
LCC subjects: Technology: Chemical technology: Biotechnology
Website: https://www.degruyter.com/view/j/jib

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