Communications Medicine (May 2024)
A comprehensive AI model development framework for consistent Gleason grading
- Xinmi Huo,
- Kok Haur Ong,
- Kah Weng Lau,
- Laurent Gole,
- David M. Young,
- Char Loo Tan,
- Xiaohui Zhu,
- Chongchong Zhang,
- Yonghui Zhang,
- Longjie Li,
- Hao Han,
- Haoda Lu,
- Jing Zhang,
- Jun Hou,
- Huanfen Zhao,
- Hualei Gan,
- Lijuan Yin,
- Xingxing Wang,
- Xiaoyue Chen,
- Hong Lv,
- Haotian Cao,
- Xiaozhen Yu,
- Yabin Shi,
- Ziling Huang,
- Gabriel Marini,
- Jun Xu,
- Bingxian Liu,
- Bingxian Chen,
- Qiang Wang,
- Kun Gui,
- Wenzhao Shi,
- Yingying Sun,
- Wanyuan Chen,
- Dalong Cao,
- Stephan J. Sanders,
- Hwee Kuan Lee,
- Susan Swee-Shan Hue,
- Weimiao Yu,
- Soo Yong Tan
Affiliations
- Xinmi Huo
- Computational Digital Pathology Lab, Bioinformatics Institute, A*STAR
- Kok Haur Ong
- Computational Digital Pathology Lab, Bioinformatics Institute, A*STAR
- Kah Weng Lau
- Computational & Molecular Pathology Lab, Institute of Molecule and Cell Biology, A*STAR
- Laurent Gole
- Computational & Molecular Pathology Lab, Institute of Molecule and Cell Biology, A*STAR
- David M. Young
- Computational & Molecular Pathology Lab, Institute of Molecule and Cell Biology, A*STAR
- Char Loo Tan
- Department of Pathology, National University Hospital, National University Health System
- Xiaohui Zhu
- Department of Pathology, Nanfang Hospital and Basic Medical College, Southern Medical University
- Chongchong Zhang
- Department of Pathology, The 910 Hospital of PLA
- Yonghui Zhang
- Department of Pathology, The 910 Hospital of PLA
- Longjie Li
- Computational Digital Pathology Lab, Bioinformatics Institute, A*STAR
- Hao Han
- Computational & Molecular Pathology Lab, Institute of Molecule and Cell Biology, A*STAR
- Haoda Lu
- Computational Digital Pathology Lab, Bioinformatics Institute, A*STAR
- Jing Zhang
- Department of Pathology, Shanghai Changzheng Hospital
- Jun Hou
- Department of Pathology, Zhongshan Hospital, Fudan University
- Huanfen Zhao
- Department of Pathology, Hebei General Hospital
- Hualei Gan
- Department of Pathology, Fudan University Shanghai Cancer Center
- Lijuan Yin
- Department of Pathology, Changhai Hospital of Shanghai
- Xingxing Wang
- Department of Pathology, Zhongshan Hospital, Fudan University
- Xiaoyue Chen
- Department of Pathology, Hebei General Hospital
- Hong Lv
- Department of Pathology, Fudan University Shanghai Cancer Center
- Haotian Cao
- Department of Pathology, Shanghai Changzheng Hospital
- Xiaozhen Yu
- Department of Pathology, Zhongshan Hospital, Fudan University
- Yabin Shi
- Department of Pathology, Hebei General Hospital
- Ziling Huang
- Department of Pathology, Fudan University Shanghai Cancer Center
- Gabriel Marini
- Computational Digital Pathology Lab, Bioinformatics Institute, A*STAR
- Jun Xu
- Institute for AI in Medicine, School of Artificial Intelligence, Nanjing University of Information Science and Technology (NUIST)
- Bingxian Liu
- Ningbo KonFoong Bioinformation Tech Co. Ltd
- Bingxian Chen
- Ningbo KonFoong Bioinformation Tech Co. Ltd
- Qiang Wang
- Ningbo KonFoong Bioinformation Tech Co. Ltd
- Kun Gui
- Ningbo KonFoong Bioinformation Tech Co. Ltd
- Wenzhao Shi
- Vishuo Biomedical Pte Ltd
- Yingying Sun
- Cancer Center, Department of Pathology, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College
- Wanyuan Chen
- Cancer Center, Department of Pathology, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College
- Dalong Cao
- Department of Urology, Fudan University Shanghai Cancer Center, Fudan University
- Stephan J. Sanders
- Department of Psychiatry and Behavioral Sciences, UCSF Weill Institute for Neurosciences, University of California
- Hwee Kuan Lee
- Computational Digital Pathology Lab, Bioinformatics Institute, A*STAR
- Susan Swee-Shan Hue
- Computational & Molecular Pathology Lab, Institute of Molecule and Cell Biology, A*STAR
- Weimiao Yu
- Computational Digital Pathology Lab, Bioinformatics Institute, A*STAR
- Soo Yong Tan
- Department of Pathology, Yong Loo Lin School of Medicine, National University of Singapore
- DOI
- https://doi.org/10.1038/s43856-024-00502-1
- Journal volume & issue
-
Vol. 4,
no. 1
pp. 1 – 13
Abstract
Abstract Background Artificial Intelligence(AI)-based solutions for Gleason grading hold promise for pathologists, while image quality inconsistency, continuous data integration needs, and limited generalizability hinder their adoption and scalability. Methods We present a comprehensive digital pathology workflow for AI-assisted Gleason grading. It incorporates A!MagQC (image quality control), A!HistoClouds (cloud-based annotation), Pathologist-AI Interaction (PAI) for continuous model improvement, Trained on Akoya-scanned images only, the model utilizes color augmentation and image appearance migration to address scanner variations. We evaluate it on Whole Slide Images (WSI) from another five scanners and conduct validations with pathologists to assess AI efficacy and PAI. Results Our model achieves an average F1 score of 0.80 on annotations and 0.71 Quadratic Weighted Kappa on WSIs for Akoya-scanned images. Applying our generalization solution increases the average F1 score for Gleason pattern detection from 0.73 to 0.88 on images from other scanners. The model accelerates Gleason scoring time by 43% while maintaining accuracy. Additionally, PAI improve annotation efficiency by 2.5 times and led to further improvements in model performance. Conclusions This pipeline represents a notable advancement in AI-assisted Gleason grading for improved consistency, accuracy, and efficiency. Unlike previous methods limited by scanner specificity, our model achieves outstanding performance across diverse scanners. This improvement paves the way for its seamless integration into clinical workflows.