Journal of Allergy and Clinical Immunology: Global (Aug 2025)
The PRIMERO birth cohort: Design and baseline characteristics
- Jonathan I. Witonsky, MD, MAS,
- Jennifer R. Elhawary, MS,
- Celeste Eng, BS,
- Sam S. Oh, PhD, MPH,
- Sandra Salazar,
- Maria G. Contreras, BS,
- Vivian Medina, RN, BSN, SC,
- Elizabeth A. Secor, MA,
- Priscilla Zhang, BS,
- Jamie L. Everman, PhD,
- Ana Fairbanks-Mahnke, BS,
- Elmar Pruesse, PhD,
- Satria P. Sajuthi, PhD,
- Chih-Hao Chang, PhD, MPH,
- Tsunami Rosado Guerrero, BS,
- Keyshla Canales Fuentes, BS,
- Natalie Lopez, MD,
- Chris Angely Montañez-López, MS,
- Emily Vazquez Morales, MD,
- Nicole Vazquez Morales, MD,
- Richeliz Alfonso Otero, MD,
- Raymarie Colon Rivera, BS,
- Leysha Rodriguez, BA,
- Gabriela Vazquez, BS,
- Donglei Hu, PhD,
- Scott Huntsman, MS,
- Nathan D. Jackson, PhD,
- Yingchun Li, MD, PhD,
- Andrew Morin, MA,
- Natalie A. Nieves, BS,
- Cydney Rios, BS,
- Gonzalo Serrano, BS,
- Blake J.M. Williams, MS,
- Elad Ziv, MD,
- Camille M. Moore, PhD,
- Dean Sheppard, MD,
- Esteban González Burchard, MD, MPH,
- Max A. Seibold, PhD,
- Jose R. Rodríguez-Santana, MD
Affiliations
- Jonathan I. Witonsky, MD, MAS
- Department of Pediatrics, University of California, San Francisco, Calif; Corresponding author: Jonathan Witonsky, MD, MAS, Department of Pediatrics, University of California, San Francisco, 550 16th St, 4th Fl, San Francisco, CA 94143.
- Jennifer R. Elhawary, MS
- Department of Medicine, University of California, San Francisco, Calif
- Celeste Eng, BS
- Department of Medicine, University of California, San Francisco, Calif
- Sam S. Oh, PhD, MPH
- Department of Medicine, University of California, San Francisco, Calif
- Sandra Salazar
- Department of Medicine, University of California, San Francisco, Calif
- Maria G. Contreras, BS
- Department of Medicine, University of California, San Francisco, Calif
- Vivian Medina, RN, BSN, SC
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Elizabeth A. Secor, MA
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Priscilla Zhang, BS
- Department of Medicine, University of California, San Francisco, Calif
- Jamie L. Everman, PhD
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Ana Fairbanks-Mahnke, BS
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Elmar Pruesse, PhD
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Satria P. Sajuthi, PhD
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Chih-Hao Chang, PhD, MPH
- Department of Medicine, University of California, San Francisco, Calif
- Tsunami Rosado Guerrero, BS
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Keyshla Canales Fuentes, BS
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Natalie Lopez, MD
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Chris Angely Montañez-López, MS
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Emily Vazquez Morales, MD
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Nicole Vazquez Morales, MD
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Richeliz Alfonso Otero, MD
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Raymarie Colon Rivera, BS
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Leysha Rodriguez, BA
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Gabriela Vazquez, BS
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Donglei Hu, PhD
- Department of Medicine, University of California, San Francisco, Calif
- Scott Huntsman, MS
- Department of Medicine, University of California, San Francisco, Calif
- Nathan D. Jackson, PhD
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Yingchun Li, MD, PhD
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Andrew Morin, MA
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Natalie A. Nieves, BS
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Cydney Rios, BS
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Gonzalo Serrano, BS
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- Blake J.M. Williams, MS
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Elad Ziv, MD
- Department of Medicine, University of California, San Francisco, Calif
- Camille M. Moore, PhD
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo
- Dean Sheppard, MD
- Department of Medicine, University of California, San Francisco, Calif
- Esteban González Burchard, MD, MPH
- Department of Medicine, University of California, San Francisco, Calif
- Max A. Seibold, PhD
- Center for Genes, Environment & Health, National Jewish Health, Denver, Colo; Department of Pediatrics and Division of Pulmonary Sciences and Critical Care Medicine, Department of Medicine, University of Colorado, Aurora, Colo
- Jose R. Rodríguez-Santana, MD
- Centro de Neumología Pediátrica, San Juan, Puerto Rico
- DOI
- https://doi.org/10.1016/j.jacig.2025.100470
- Journal volume & issue
-
Vol. 4,
no. 3
p. 100470
Abstract
Background: Although early-life respiratory illnesses (RIs) are linked to childhood asthma, it is unclear whether children are predisposed to both conditions or if RIs induce alterations that lead to asthma. Puerto Rican children, who bear a disproportionate burden of early-life RIs and asthma, are an important population for studying this relationship. Objective: We sought to describe the design and baseline characteristics of the Puerto Rican Infant Metagenomic and Epidemiologic Study of Respiratory Outcomes (PRIMERO) birth cohort. Methods: PRIMERO is designed to examine the role of respiratory viruses on the development of RIs and asthma. Pregnant women were recruited at Hospital Interamericano de Medicina Avanzada–San Pablo in Caguas, Puerto Rico. Questionnaires at birth and annual follow-ups gather clinical, social, and environmental data. Collected samples include postterm maternal blood; infant cord blood; the child’s blood at year 2; and the child’s nasal airway epithelium at birth, during RIs over the first 2 years, and annually until age 5. Results: We enrolled 2,100 mother–child dyads into the PRIMERO study between February 2020 and June 2023, representing 59% of births at Hospital Interamericano de Medicina Avanzada. As of April 29, 2024, 2,069 participants remain active, with high rates of biospecimen collection and annual visit participation. Illness surveillance detected 6,076 RIs, with 38.4% involving the lower respiratory tract. Conclusion: The PRIMERO birth cohort study, with its comprehensive data on viral exposures, respiratory outcomes, and airway molecular phenotypes in a high-risk population of Puerto Rican children, is uniquely positioned to address long-standing questions about the early-life determinants and mechanisms underlying virus-related asthma development.
Keywords
- Childhood asthma
- respiratory illness
- birth cohort
- gene–environment interactions
- transcriptomics
- viral pathogen detection