Nature Communications (Jul 2019)

High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes

  • Mandeep Singh,
  • Ghamdan Al-Eryani,
  • Shaun Carswell,
  • James M. Ferguson,
  • James Blackburn,
  • Kirston Barton,
  • Daniel Roden,
  • Fabio Luciani,
  • Tri Giang Phan,
  • Simon Junankar,
  • Katherine Jackson,
  • Christopher C. Goodnow,
  • Martin A. Smith,
  • Alexander Swarbrick

DOI
https://doi.org/10.1038/s41467-019-11049-4
Journal volume & issue
Vol. 10, no. 1
pp. 1 – 13

Abstract

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Single cell RNA sequencing generates short reads from one end of a template, providing incomplete transcript coverage and limiting identification of diverse sequences such as antigen receptors. Here the authors combine long read nanopore sequencing with short read profiling of barcoded libraries to generate full-length antigen receptor sequences.