Nature Communications (Aug 2019)

Past–future information bottleneck for sampling molecular reaction coordinate simultaneously with thermodynamics and kinetics

  • Yihang Wang,
  • João Marcelo Lamim Ribeiro,
  • Pratyush Tiwary

DOI
https://doi.org/10.1038/s41467-019-11405-4
Journal volume & issue
Vol. 10, no. 1
pp. 1 – 8

Abstract

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Efficient sampling of rare events in all-atom molecular dynamics simulations remains a challenge. Here, the authors adapt the Predictive Information Bottleneck framework to sample biomolecular structure and dynamics through iterative rounds of biased simulations and deep learning.