Nature Communications (Jul 2020)
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
- Sean P. Gordon,
- Bruno Contreras-Moreira,
- Joshua J. Levy,
- Armin Djamei,
- Angelika Czedik-Eysenberg,
- Virginia S. Tartaglio,
- Adam Session,
- Joel Martin,
- Amy Cartwright,
- Andrew Katz,
- Vasanth R. Singan,
- Eugene Goltsman,
- Kerrie Barry,
- Vinh Ha Dinh-Thi,
- Boulos Chalhoub,
- Antonio Diaz-Perez,
- Ruben Sancho,
- Joanna Lusinska,
- Elzbieta Wolny,
- Candida Nibau,
- John H. Doonan,
- Luis A. J. Mur,
- Chris Plott,
- Jerry Jenkins,
- Samuel P. Hazen,
- Scott J. Lee,
- Shengqiang Shu,
- David Goodstein,
- Daniel Rokhsar,
- Jeremy Schmutz,
- Robert Hasterok,
- Pilar Catalan,
- John P. Vogel
Affiliations
- Sean P. Gordon
- DOE Joint Genome Institute
- Bruno Contreras-Moreira
- Estación Experimental de Aula Dei (EEAD-CSIC)
- Joshua J. Levy
- DOE Joint Genome Institute
- Armin Djamei
- Gregor Mendel Institute of Molecular Plant Biology GmbH
- Angelika Czedik-Eysenberg
- Gregor Mendel Institute of Molecular Plant Biology GmbH
- Virginia S. Tartaglio
- DOE Joint Genome Institute
- Adam Session
- DOE Joint Genome Institute
- Joel Martin
- DOE Joint Genome Institute
- Amy Cartwright
- DOE Joint Genome Institute
- Andrew Katz
- DOE Joint Genome Institute
- Vasanth R. Singan
- DOE Joint Genome Institute
- Eugene Goltsman
- DOE Joint Genome Institute
- Kerrie Barry
- DOE Joint Genome Institute
- Vinh Ha Dinh-Thi
- Organization and evolution of complex genomes (OECG) Institut national de la Recherche agronomique (INRA), Université d’Evry Val d’Essonne (UEVE)
- Boulos Chalhoub
- Organization and evolution of complex genomes (OECG) Institut national de la Recherche agronomique (INRA), Université d’Evry Val d’Essonne (UEVE)
- Antonio Diaz-Perez
- Universidad de Zaragoza-Escuela Politécnica Superior de Huesca
- Ruben Sancho
- Universidad de Zaragoza-Escuela Politécnica Superior de Huesca
- Joanna Lusinska
- Plant Cytogenetics and Molecular Biology Group, Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice
- Elzbieta Wolny
- Plant Cytogenetics and Molecular Biology Group, Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice
- Candida Nibau
- Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University
- John H. Doonan
- Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University
- Luis A. J. Mur
- Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University
- Chris Plott
- HudsonAlpha Institute for Biotechnology
- Jerry Jenkins
- HudsonAlpha Institute for Biotechnology
- Samuel P. Hazen
- Biology Department, University of Massachusetts Amherst
- Scott J. Lee
- Biology Department, University of Massachusetts Amherst
- Shengqiang Shu
- DOE Joint Genome Institute
- David Goodstein
- DOE Joint Genome Institute
- Daniel Rokhsar
- DOE Joint Genome Institute
- Jeremy Schmutz
- DOE Joint Genome Institute
- Robert Hasterok
- Plant Cytogenetics and Molecular Biology Group, Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice
- Pilar Catalan
- Grupo de Bioquímica, Biofísica y Biología Computacional (BIFI, UNIZAR), Unidad Asociada al CSIC
- John P. Vogel
- DOE Joint Genome Institute
- DOI
- https://doi.org/10.1038/s41467-020-17302-5
- Journal volume & issue
-
Vol. 11,
no. 1
pp. 1 – 16
Abstract
Existing plant pan-genomic studies usually report considerable intraspecific whole gene presence-absence variation. Here, the authors use pan-genomic approach to reveal gradual polyploid genome evolution by analyzing of Brachypodium hybridum and its diploid progenitors.
