Nature Communications (May 2020)
Integrative analysis of reference epigenomes in 20 rice varieties
- Lun Zhao,
- Liang Xie,
- Qing Zhang,
- Weizhi Ouyang,
- Li Deng,
- Pengpeng Guan,
- Meng Ma,
- Yue Li,
- Ying Zhang,
- Qin Xiao,
- Jingwen Zhang,
- Hongmeijuan Li,
- Shunyao Wang,
- Jiangwei Man,
- Zhilin Cao,
- Qinghua Zhang,
- Qifa Zhang,
- Guoliang Li,
- Xingwang Li
Affiliations
- Lun Zhao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Liang Xie
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Qing Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Weizhi Ouyang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Li Deng
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Pengpeng Guan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Meng Ma
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Yue Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Ying Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Qin Xiao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Jingwen Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Hongmeijuan Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Shunyao Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Jiangwei Man
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Zhilin Cao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Qinghua Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Qifa Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Guoliang Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- Xingwang Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
- DOI
- https://doi.org/10.1038/s41467-020-16457-5
- Journal volume & issue
-
Vol. 11,
no. 1
pp. 1 – 16
Abstract
Comprehensive epigenomic maps of various rice varieties are still unavailable. Here, the authors report the development of eChIP as a fast and low-input upgrade of regular plant ChIP-seq protocol for epigenome analysis of 20 rice varieties and annotate over 80% of the genome with different epigenome properties for transcriptional regulation.
