The Plant Genome (Sep 2023)

The conservation of gene models can support genome annotation

  • Cassandria G. Tay Fernandez,
  • Philipp E. Bayer,
  • Jakob Petereit,
  • Rajeev Varshney,
  • Jacqueline Batley,
  • David Edwards

DOI
https://doi.org/10.1002/tpg2.20377
Journal volume & issue
Vol. 16, no. 3
pp. n/a – n/a

Abstract

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Abstract Many genome annotations include false‐positive gene models, leading to errors in phylogenetic and comparative studies. Here, we propose a method to support gene model prediction based on evolutionary conservation and use it to identify potentially erroneous annotations. Using this method, we developed a set of 15,345 representative gene models from 12 legume assemblies that can be used to support genome annotations for other legumes.