Nature Communications (Oct 2020)
The structural variation landscape in 492 Atlantic salmon genomes
- Alicia C. Bertolotti,
- Ryan M. Layer,
- Manu Kumar Gundappa,
- Michael D. Gallagher,
- Ege Pehlivanoglu,
- Torfinn Nome,
- Diego Robledo,
- Matthew P. Kent,
- Line L. Røsæg,
- Matilde M. Holen,
- Teshome D. Mulugeta,
- Thomas J. Ashton,
- Kjetil Hindar,
- Harald Sægrov,
- Bjørn Florø-Larsen,
- Jaakko Erkinaro,
- Craig R. Primmer,
- Louis Bernatchez,
- Samuel A. M. Martin,
- Ian A. Johnston,
- Simen R. Sandve,
- Sigbjørn Lien,
- Daniel J. Macqueen
Affiliations
- Alicia C. Bertolotti
- School of Biological Sciences, University of Aberdeen
- Ryan M. Layer
- BioFrontiers Institute, University of Colorado
- Manu Kumar Gundappa
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh
- Michael D. Gallagher
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh
- Ege Pehlivanoglu
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh
- Torfinn Nome
- Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences
- Diego Robledo
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh
- Matthew P. Kent
- Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences
- Line L. Røsæg
- Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences
- Matilde M. Holen
- Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences
- Teshome D. Mulugeta
- Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences
- Thomas J. Ashton
- Xelect Ltd
- Kjetil Hindar
- Norwegian Institute for Nature Research (NINA)
- Harald Sægrov
- Rådgivende Biologer AS
- Bjørn Florø-Larsen
- Norwegian Veterinary Institute
- Jaakko Erkinaro
- Natural Resources Institute Finland (Luke)
- Craig R. Primmer
- Institute for Biotechnology, University of Helsinki
- Louis Bernatchez
- Institut de Biologie Intégrative et des Systèmes (IBIS) Pavillon Charles-Eugène Marchand, Université Laval Québec
- Samuel A. M. Martin
- School of Biological Sciences, University of Aberdeen
- Ian A. Johnston
- Xelect Ltd
- Simen R. Sandve
- Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences
- Sigbjørn Lien
- Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences
- Daniel J. Macqueen
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh
- DOI
- https://doi.org/10.1038/s41467-020-18972-x
- Journal volume & issue
-
Vol. 11,
no. 1
pp. 1 – 16
Abstract
This study presents and validates a novel approach to reliably identify structural variations (SVs) in non-model genomes using whole genome sequencing, which was used to detect 15,483 SVs in 492 Atlantic salmon, shedding light on their roles in genome evolution and the genetic architecture of domestication.
