This paper describes the implementation of a hydrogen-based system for an autonomous surface vehicle in an effort to reduce environmental impact and increase driving range. In a suitable computational environment, the dynamic electrical model of the entire hybrid powertrain, consisting of a proton exchange membrane fuel cell, a hydrogen metal hydride storage system, a lithium battery, two brushless DC motors, and two control subsystems, is implemented. The developed calculation tool is used to perform the dynamic analysis of the hybrid propulsion system during four different operating journeys, investigating the performance achieved to examine the obtained performance, determine the feasibility of the work runs and highlight the critical points. During the trips, the engine shows fluctuating performance trends while the energy consumption reaches 1087 Wh for the fuel cell (corresponding to 71 g of hydrogen) and 370 Wh for the battery, consuming almost all the energy stored on board.