Nature Communications (Feb 2022)
Genomic insights into the evolution of Echinochloa species as weed and orphan crop
- Dongya Wu,
- Enhui Shen,
- Bowen Jiang,
- Yu Feng,
- Wei Tang,
- Sangting Lao,
- Lei Jia,
- Han-Yang Lin,
- Lingjuan Xie,
- Xifang Weng,
- Chenfeng Dong,
- Qinghong Qian,
- Feng Lin,
- Haiming Xu,
- Huabing Lu,
- Luan Cutti,
- Huajun Chen,
- Shuiguang Deng,
- Longbiao Guo,
- Tse-Seng Chuah,
- Beng-Kah Song,
- Laura Scarabel,
- Jie Qiu,
- Qian-Hao Zhu,
- Qin Yu,
- Michael P. Timko,
- Hirofumi Yamaguchi,
- Aldo Merotto,
- Yingxiong Qiu,
- Kenneth M. Olsen,
- Longjiang Fan,
- Chu-Yu Ye
Affiliations
- Dongya Wu
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Enhui Shen
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Bowen Jiang
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Yu Feng
- Institute of Ecology, Zhejiang University
- Wei Tang
- State Key Laboratory of Rice Biology, China National Rice Research Institute
- Sangting Lao
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Lei Jia
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Han-Yang Lin
- Institute of Ecology, Zhejiang University
- Lingjuan Xie
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Xifang Weng
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Chenfeng Dong
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Qinghong Qian
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Feng Lin
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Haiming Xu
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Huabing Lu
- Institute of Maize and Upland Grain, Zhejiang Academy of Agricultural Sciences
- Luan Cutti
- Department of Crop Sciences, Agricultural School, Federal University of Rio Grande do Sul
- Huajun Chen
- College of Computer Science and Technology, Zhejiang University
- Shuiguang Deng
- College of Computer Science and Technology, Zhejiang University
- Longbiao Guo
- State Key Laboratory of Rice Biology, China National Rice Research Institute
- Tse-Seng Chuah
- Faculty of Plantation and Agrotechnology, Universiti Teknologi MARA
- Beng-Kah Song
- School of Science, Monash University Malaysia
- Laura Scarabel
- Istituto per la Protezione Sostenibile delle Piante (IPSP), CNR, Viale dell’Università, 16
- Jie Qiu
- Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University
- Qian-Hao Zhu
- CSIRO Agriculture and Food
- Qin Yu
- Australian Herbicide Resistance Initiative, School of Agriculture and Environment, University of Western Australia
- Michael P. Timko
- Department of Biology, University of Virginia
- Hirofumi Yamaguchi
- Osaka Prefecture University, Sakai
- Aldo Merotto
- Department of Crop Sciences, Agricultural School, Federal University of Rio Grande do Sul
- Yingxiong Qiu
- Institute of Ecology, Zhejiang University
- Kenneth M. Olsen
- Department of Biology, Washington University in St. Louis
- Longjiang Fan
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- Chu-Yu Ye
- Institute of Crop Science & Institute of Bioinformatics, Zhejiang University
- DOI
- https://doi.org/10.1038/s41467-022-28359-9
- Journal volume & issue
-
Vol. 13,
no. 1
pp. 1 – 16
Abstract
Echinochloa is an important genus in the grass family as many of them are either problematic weeds or domesticated millets. Here, the authors assemble three polyploidy genomes in this genus using the diploid-assisted scaffolding method DipHic and provide genomic insights into the dual roles of some species as weeds and orphan crops.
