Nature Communications (May 2022)
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data
- Sarah B. Reiff,
- Andrew J. Schroeder,
- Koray Kırlı,
- Andrea Cosolo,
- Clara Bakker,
- Soohyun Lee,
- Alexander D. Veit,
- Alexander K. Balashov,
- Carl Vitzthum,
- William Ronchetti,
- Kent M. Pitman,
- Jeremy Johnson,
- Shannon R. Ehmsen,
- Peter Kerpedjiev,
- Nezar Abdennur,
- Maxim Imakaev,
- Serkan Utku Öztürk,
- Uğur Çamoğlu,
- Leonid A. Mirny,
- Nils Gehlenborg,
- Burak H. Alver,
- Peter J. Park
Affiliations
- Sarah B. Reiff
- Department of Biomedical Informatics, Harvard Medical School
- Andrew J. Schroeder
- Department of Biomedical Informatics, Harvard Medical School
- Koray Kırlı
- Department of Biomedical Informatics, Harvard Medical School
- Andrea Cosolo
- Department of Biomedical Informatics, Harvard Medical School
- Clara Bakker
- Department of Biomedical Informatics, Harvard Medical School
- Soohyun Lee
- Department of Biomedical Informatics, Harvard Medical School
- Alexander D. Veit
- Department of Biomedical Informatics, Harvard Medical School
- Alexander K. Balashov
- Department of Biomedical Informatics, Harvard Medical School
- Carl Vitzthum
- Department of Biomedical Informatics, Harvard Medical School
- William Ronchetti
- Department of Biomedical Informatics, Harvard Medical School
- Kent M. Pitman
- Department of Biomedical Informatics, Harvard Medical School
- Jeremy Johnson
- Department of Biomedical Informatics, Harvard Medical School
- Shannon R. Ehmsen
- Department of Biomedical Informatics, Harvard Medical School
- Peter Kerpedjiev
- Department of Biomedical Informatics, Harvard Medical School
- Nezar Abdennur
- Institute for Medical Engineering and Science, Massachusetts Institute of Technology
- Maxim Imakaev
- Institute for Medical Engineering and Science, Massachusetts Institute of Technology
- Serkan Utku Öztürk
- Karya SMD Software Solutions
- Uğur Çamoğlu
- Karya SMD Software Solutions
- Leonid A. Mirny
- Institute for Medical Engineering and Science, Massachusetts Institute of Technology
- Nils Gehlenborg
- Department of Biomedical Informatics, Harvard Medical School
- Burak H. Alver
- Department of Biomedical Informatics, Harvard Medical School
- Peter J. Park
- Department of Biomedical Informatics, Harvard Medical School
- DOI
- https://doi.org/10.1038/s41467-022-29697-4
- Journal volume & issue
-
Vol. 13,
no. 1
pp. 1 – 11
Abstract
This paper describes the ‘4DN Data Portal’ that hosts data generated by the 4D Nucleome network, including Hi-C and other chromatin conformation capture assays, as well as various sequencing-based and imaging-based assays. Raw data have been uniformly processed to increase comparability and the portal is implemented with visualization tools to browse the data without download.
