Nature Communications (May 2022)

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

  • Sarah B. Reiff,
  • Andrew J. Schroeder,
  • Koray Kırlı,
  • Andrea Cosolo,
  • Clara Bakker,
  • Soohyun Lee,
  • Alexander D. Veit,
  • Alexander K. Balashov,
  • Carl Vitzthum,
  • William Ronchetti,
  • Kent M. Pitman,
  • Jeremy Johnson,
  • Shannon R. Ehmsen,
  • Peter Kerpedjiev,
  • Nezar Abdennur,
  • Maxim Imakaev,
  • Serkan Utku Öztürk,
  • Uğur Çamoğlu,
  • Leonid A. Mirny,
  • Nils Gehlenborg,
  • Burak H. Alver,
  • Peter J. Park

DOI
https://doi.org/10.1038/s41467-022-29697-4
Journal volume & issue
Vol. 13, no. 1
pp. 1 – 11

Abstract

Read online

This paper describes the ‘4DN Data Portal’ that hosts data generated by the 4D Nucleome network, including Hi-C and other chromatin conformation capture assays, as well as various sequencing-based and imaging-based assays. Raw data have been uniformly processed to increase comparability and the portal is implemented with visualization tools to browse the data without download.