Understanding the exchange of energy between the surface and the atmosphere is important in view of the climate scenario. However, it becomes a challenging task due to a sparse network of observations. This study aims to improve the energy balance estimates for the Amazon, Cerrado, and Pampa biomes located in South America using the radiation and precipitation forcing obtained from the Clouds and the Earth’s Radiant Energy System (CERES) and the precipitation CPTEC/MERGE datasets. We employed three surface models—Noah-MP, Community Land Model (CLSM), and Integrated Biosphere Simulator (IBIS)—and conducted modeling experiments, termed South America Land Data Assimilation System (SALDAS-2). The results showed that SALDAS-2 radiation estimates had the smallest errors. Moreover, SALDAS-2 precipitation estimates were better than the Global Land Data Assimilation System (GLDAS) in the Cerrado (MBE = −0.16) and Pampa (MBE = −0.19). Noah-MP presented improvements compared with CLSM and IBIS in 100% of towers located in the Amazon. CLSM tends to overestimate the latent heat flux and underestimate the sensible heat flux in the Amazon. Noah-MP and Ensemble outperformed GLDAS in terms latent and sensible heat fluxes. The potential of SALDAS-2 should be emphasized to provide more accurate estimates of surface energy balance.
