Advanced Science (Jun 2021)

Targeted RNA N6‐Methyladenosine Demethylation Controls Cell Fate Transition in Human Pluripotent Stem Cells

  • Xuena Chen,
  • Qingquan Zhao,
  • Yu‐Li Zhao,
  • Guo‐Shi Chai,
  • Weisheng Cheng,
  • Zhiju Zhao,
  • Jia Wang,
  • Guan‐Zheng Luo,
  • Nan Cao

DOI
https://doi.org/10.1002/advs.202003902
Journal volume & issue
Vol. 8, no. 11
pp. n/a – n/a

Abstract

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Abstract Deficiency of the N6‐methyladenosine (m6A) methyltransferase complex results in global reduction of m6A abundance and defective cell development in embryonic stem cells (ESCs). However, it's unclear whether regional m6A methylation affects cell fate decisions due to the inability to modulate individual m6A modification in ESCs with precise temporal control. Here, a targeted RNA m6A erasure (TRME) system is developed to achieve site‐specific demethylation of RNAs in human ESCs (hESCs). TRME, in which a stably transfected, doxycycline‐inducible dCas13a is fused to the catalytic domain of ALKBH5, can precisely and reversibly demethylate the targeted m6A site of mRNA and increase mRNA stability with limited off‐target effects. It is further demonstrated that temporal m6A erasure on a single site of SOX2 is sufficient to control the differentiation of hESCs. This study provides a versatile toolbox to reveal the function of individual m6A modification in hESCs, enabling cell fate control studies at the epitranscriptional level.

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