A Deep Learning Approach for Detecting Colorectal Cancer via Raman Spectra
Zheng Cao,
Xiang Pan,
Hongyun Yu,
Shiyuan Hua,
Da Wang,
Danny Z. Chen,
Min Zhou,
Jian Wu
Affiliations
Zheng Cao
RealDoctor AI Research Center, College of Computer Science and Technology, Zhejiang University, China
Xiang Pan
Key Laboratory of Cancer Prevention and Intervention, Ministry of Education, The Second Affiliated Hospital, Zhejiang University School of Medicine, China
Hongyun Yu
RealDoctor AI Research Center, College of Computer Science and Technology, Zhejiang University, China
Shiyuan Hua
Institute of Translational Medicine and the Cancer Institute of the Second Affiliated Hospital, Zhejiang University School of Medicine, China
Da Wang
Key Laboratory of Cancer Prevention and Intervention, Ministry of Education, The Second Affiliated Hospital, Zhejiang University School of Medicine, China
Danny Z. Chen
Department of Computer Science and Engineering, University of Notre Dame, USA
Min Zhou
Institute of Translational Medicine and the Cancer Institute of the Second Affiliated Hospital, Zhejiang University School of Medicine, China
Jian Wu
Second Affiliated Hospital School of Medicine, and School of Public Health, Zhejiang University, China
Objective and Impact Statement. Distinguishing tumors from normal tissues is vital in the intraoperative diagnosis and pathological examination. In this work, we propose to utilize Raman spectroscopy as a novel modality in surgery to detect colorectal cancer tissues. Introduction. Raman spectra can reflect the substance components of the target tissues. However, the feature peak is slight and hard to detect due to environmental noise. Collecting a high-quality Raman spectroscopy dataset and developing effective deep learning detection methods are possibly viable approaches. Methods. First, we collect a large Raman spectroscopy dataset from 26 colorectal cancer patients with the Raman shift ranging from 385 to 1545 cm −1. Second, a one-dimensional residual convolutional neural network (1D-ResNet) architecture is designed to classify the tumor tissues of colorectal cancer. Third, we visualize and interpret the fingerprint peaks found by our deep learning model. Results. Experimental results show that our deep learning method achieves 98.5% accuracy in the detection of colorectal cancer and outperforms traditional methods. Conclusion. Overall, Raman spectra are a novel modality for clinical detection of colorectal cancer. Our proposed ensemble 1D-ResNet could effectively classify the Raman spectra obtained from colorectal tumor tissues or normal tissues.