Computational and Structural Biotechnology Journal (Jan 2022)

SDC: An integrated database for sex differences in cancer

  • Long-Fei Zhao,
  • Jin-Ge Zhang,
  • Feng-Yu Qi,
  • Wei-Yan Hou,
  • Yin-Rui Li,
  • Dan-Dan Shen,
  • Li-Juan Zhao,
  • Lin Qi,
  • Hong-Min Liu,
  • Yi-Chao Zheng

Journal volume & issue
Vol. 20
pp. 1068 – 1076

Abstract

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Sex differences are evident in the incidence and mortality of diverse cancers. With the development of personalized approaches in cancer treatment, the impact of sex differences has not been systematically incorporated into preclinical and clinical cancer research. The molecular mechanisms underlying sex differences in cancer have not been elucidated. Here, we developed the first database of Sex Differences in Cancer (SDC), a web-based public database that integrates resources from multiple databases, including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project (GTEx), UCSC Xena, Broad Institute Cancer Cell Line Encyclopedia (CCLE), Genomics of Drug Sensitivity in Cancer (GDSC). SDC contains 27 types of cancers, 6 types of molecular data, more than 10,000 donors, 977 cancer cell lines were used to analyze sex differences among cancers. It provides five main modules: Survival and phenotype, Molecular differences, Signatures and pathways, Therapy response, Download. Users can download the all the visualized results and raw data after analysis. Collectively, SDC is the first integrated database to analyze sex differences in cancer on the web server, which will strengthen our understanding of the role of sex in cancers. It is implemented in Shiny-server and freely available for public use at http://sdc.anticancer.xyz.

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