PeerJ (Nov 2020)

Identification of L-asparaginases from Streptomyces strains with competitive activity and immunogenic profiles: a bioinformatic approach

  • Iván González-Torres,
  • Ernesto Perez-Rueda,
  • Zahaed Evangelista-Martínez,
  • Andrés Zárate-Romero,
  • Angélica Moreno-Enríquez,
  • Alejandro Huerta-Saquero

DOI
https://doi.org/10.7717/peerj.10276
Journal volume & issue
Vol. 8
p. e10276

Abstract

Read online Read online

The enzyme L-asparaginase from Escherichia coli is a therapeutic enzyme that has been a cornerstone in the clinical treatment of acute lymphoblastic leukemia for the last decades. However, treatment effectiveness is limited by the highly immunogenic nature of the protein and its cross-reactivity towards L-glutamine. In this work, a bioinformatic approach was used to identify, select and computationally characterize L-asparaginases from Streptomyces through sequence-based screening analyses, immunoinformatics, homology modeling, and molecular docking studies. Based on its predicted low immunogenicity and excellent enzymatic activity, we selected a previously uncharacterized L-asparaginase from Streptomyces scabrisporus. Furthermore, two putative asparaginase binding sites were identified and a 3D model is proposed. These promising features allow us to propose L-asparaginase from S. scabrisporus as an alternative for the treatment of acute lymphocytic leukemia.

Keywords