IUCrJ (Mar 2020)

The predictive power of data-processing statistics

  • Melanie Vollmar,
  • James M. Parkhurst,
  • Dominic Jaques,
  • Arnaud Baslé,
  • Garib N. Murshudov,
  • David G. Waterman,
  • Gwyndaf Evans

DOI
https://doi.org/10.1107/S2052252520000895
Journal volume & issue
Vol. 7, no. 2
pp. 342 – 354

Abstract

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This study describes a method to estimate the likelihood of success in determining a macromolecular structure by X-ray crystallography and experimental single-wavelength anomalous dispersion (SAD) or multiple-wavelength anomalous dispersion (MAD) phasing based on initial data-processing statistics and sample crystal properties. Such a predictive tool can rapidly assess the usefulness of data and guide the collection of an optimal data set. The increase in data rates from modern macromolecular crystallography beamlines, together with a demand from users for real-time feedback, has led to pressure on computational resources and a need for smarter data handling. Statistical and machine-learning methods have been applied to construct a classifier that displays 95% accuracy for training and testing data sets compiled from 440 solved structures. Applying this classifier to new data achieved 79% accuracy. These scores already provide clear guidance as to the effective use of computing resources and offer a starting point for a personalized data-collection assistant.

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