Scientific Data (Nov 2021)
Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study
- Yongmei Zhao,
- Li Tai Fang,
- Tsai-wei Shen,
- Sulbha Choudhari,
- Keyur Talsania,
- Xiongfong Chen,
- Jyoti Shetty,
- Yuliya Kriga,
- Bao Tran,
- Bin Zhu,
- Zhong Chen,
- Wanqiu Chen,
- Charles Wang,
- Erich Jaeger,
- Daoud Meerzaman,
- Charles Lu,
- Kenneth Idler,
- Luyao Ren,
- Yuanting Zheng,
- Leming Shi,
- Virginie Petitjean,
- Marc Sultan,
- Tiffany Hung,
- Eric Peters,
- Jiri Drabek,
- Petr Vojta,
- Roberta Maestro,
- Daniela Gasparotto,
- Sulev Kõks,
- Ene Reimann,
- Andreas Scherer,
- Jessica Nordlund,
- Ulrika Liljedahl,
- Jonathan Foox,
- Christopher E. Mason,
- Chunlin Xiao,
- Huixiao Hong,
- Wenming Xiao
Affiliations
- Yongmei Zhao
- Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research
- Li Tai Fang
- Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc.
- Tsai-wei Shen
- Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research
- Sulbha Choudhari
- Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research
- Keyur Talsania
- Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research
- Xiongfong Chen
- Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research
- Jyoti Shetty
- Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research
- Yuliya Kriga
- Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research
- Bao Tran
- Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research
- Bin Zhu
- Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health
- Zhong Chen
- Center for Genomics, School of Medicine, Loma Linda University
- Wanqiu Chen
- Center for Genomics, School of Medicine, Loma Linda University
- Charles Wang
- Center for Genomics, School of Medicine, Loma Linda University
- Erich Jaeger
- Core Applications Group, Product Development, Illumina Inc
- Daoud Meerzaman
- Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, National Institutes of Health
- Charles Lu
- AbbVie Genomics Research Center
- Kenneth Idler
- AbbVie Genomics Research Center
- Luyao Ren
- State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Center, Fudan University
- Yuanting Zheng
- State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Center, Fudan University
- Leming Shi
- State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Center, Fudan University
- Virginie Petitjean
- Biomarker Development, Novartis Institutes for Biomedical Research
- Marc Sultan
- Biomarker Development, Novartis Institutes for Biomedical Research
- Tiffany Hung
- Companion Diagnostics Development, Oncology Biomarker Development, Genentech
- Eric Peters
- Companion Diagnostics Development, Oncology Biomarker Development, Genentech
- Jiri Drabek
- IMTM, Faculty of Medicine and Dentistry, Palacky University
- Petr Vojta
- IMTM, Faculty of Medicine and Dentistry, Palacky University
- Roberta Maestro
- Member of EATRIS ERIC - European Infrastructure for Translational Medicine
- Daniela Gasparotto
- Member of EATRIS ERIC - European Infrastructure for Translational Medicine
- Sulev Kõks
- Member of EATRIS ERIC - European Infrastructure for Translational Medicine
- Ene Reimann
- Member of EATRIS ERIC - European Infrastructure for Translational Medicine
- Andreas Scherer
- Member of EATRIS ERIC - European Infrastructure for Translational Medicine
- Jessica Nordlund
- Member of EATRIS ERIC - European Infrastructure for Translational Medicine
- Ulrika Liljedahl
- Member of EATRIS ERIC - European Infrastructure for Translational Medicine
- Jonathan Foox
- Department of Physiology and Biophysics, Weill Cornell Medicine
- Christopher E. Mason
- Department of Physiology and Biophysics, Weill Cornell Medicine
- Chunlin Xiao
- National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health
- Huixiao Hong
- National Center for Toxicological Research, U.S. Food and Drug Administration, FDA
- Wenming Xiao
- The Center for Drug Evaluation and Research, U.S. Food and Drug Administration, FDA
- DOI
- https://doi.org/10.1038/s41597-021-01077-5
- Journal volume & issue
-
Vol. 8,
no. 1
pp. 1 – 14
Abstract
Measurement(s) Somatic Mutation Analysis Technology Type(s) whole genome sequencing • Whole Exome Sequencing Factor Type(s) sequencing platform • sample prepration • library preparation • bioinformatics method Sample Characteristic - Organism Homo sapiens Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.16713655
