Nature Communications (Aug 2020)

ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation

  • Mette Bentsen,
  • Philipp Goymann,
  • Hendrik Schultheis,
  • Kathrin Klee,
  • Anastasiia Petrova,
  • René Wiegandt,
  • Annika Fust,
  • Jens Preussner,
  • Carsten Kuenne,
  • Thomas Braun,
  • Johnny Kim,
  • Mario Looso

DOI
https://doi.org/10.1038/s41467-020-18035-1
Journal volume & issue
Vol. 11, no. 1
pp. 1 – 11

Abstract

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Footprinting analysis allows genome-wide investigation of transcription factor (TF) binding on chromatin. Here the authors developed a framework termed TOBIAS aimed at identifying footprints of chromatin-associated proteins from ATAC-seq accessibility profiles and apply it to zygotic development datasets.