BMC Medical Genomics (May 2009)

Identification of microbial DNA in human cancer

  • Vogelstein Bert,
  • Kopelovich Levy,
  • Bigner Darell,
  • Edwards Jennifer,
  • Riggins Gregory J,
  • Wang Tian-Li,
  • Schaefer Carl F,
  • Di Chunhui,
  • Cummins Jordan,
  • Lin Jimmy,
  • Leary Rebecca J,
  • Duncan Christopher G,
  • Kinzler Kenneth W,
  • Velculescu Victor E,
  • Yan Hai

DOI
https://doi.org/10.1186/1755-8794-2-22
Journal volume & issue
Vol. 2, no. 1
p. 22

Abstract

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Abstract Background Microorganisms have been associated with many types of human diseases; however, a significant number of clinically important microbial pathogens remain to be discovered. Methods We have developed a genome-wide approach, called Digital Karyotyping Microbe Identification (DK-MICROBE), to identify genomic DNA of bacteria and viruses in human disease tissues. This method involves the generation of an experimental DNA tag library through Digital Karyotyping (DK) followed by analysis of the tag sequences for the presence of microbial DNA content using a compiled microbial DNA virtual tag library. Results To validate this technology and to identify pathogens that may be associated with human cancer pathogenesis, we used DK-MICROBE to determine the presence of microbial DNA in 58 human tumor samples, including brain, ovarian, and colorectal cancers. We detected DNA from Human herpesvirus 6 (HHV-6) in a DK library of a colorectal cancer liver metastasis and in normal tissue from the same patient. Conclusion DK-MICROBE can identify previously unknown infectious agents in human tumors, and is now available for further applications for the identification of pathogen DNA in human cancer and other diseases.