BioTechniques (May 2020)

A rapid and simple bead-bashing-based method for genomic DNA extraction from mammalian tissue

  • Shan Wei,
  • Brynn Levy,
  • Nataly Hoffman,
  • Claudia Cujar,
  • Reunet Rodney-Sandy,
  • Ronald Wapner,
  • Mary D'Alton,
  • Zev Williams

DOI
https://doi.org/10.2144/btn-2019-0172
Journal volume & issue
Vol. 68, no. 5
pp. 240 – 244

Abstract

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Conventional genomic DNA (gDNA) extraction methods can take hours to complete, may require fume hoods and represent the most time-consuming step in many gDNA-based molecular assays. We systematically optimized a bead bashing-based (BBB) approach for rapid gDNA extraction without the need for a fume hood. Human tissue specimens (n = 34) subjected to the 12-min BBB method yielded 0.40 ± 0.17 (mean ± SD) μg of gDNA per milligram of tissue, sufficient for many downstream applications, and 3- and 6-min extensions resulted in an additional 0.43 ± 0.23 μg and 0.48 ± 0.43 μg per milligram of tissue, respectively. The BBB method provides a simple and rapid method for gDNA extraction from mammalian tissue that is applicable to time-sensitive clinical applications.

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