Technologies (May 2022)
STAMINA: Bioinformatics Platform for Monitoring and Mitigating Pandemic Outbreaks
- Nikolaos Bakalos,
- Maria Kaselimi,
- Nikolaos Doulamis,
- Anastasios Doulamis,
- Dimitrios Kalogeras,
- Mathaios Bimpas,
- Agapi Davradou,
- Aggeliki Vlachostergiou,
- Anaxagoras Fotopoulos,
- Maria Plakia,
- Alexandros Karalis,
- Sofia Tsekeridou,
- Themistoklis Anagnostopoulos,
- Angela Maria Despotopoulou,
- Ilaria Bonavita,
- Katrina Petersen,
- Leonidas Pelepes,
- Lefteris Voumvourakis,
- Anastasia Anagnostou,
- Derek Groen,
- Kate Mintram,
- Arindam Saha,
- Simon J. E. Taylor,
- Charon van der Ham,
- Patrick Kaleta,
- Dražen Ignjatović,
- Luca Rossi
Affiliations
- Nikolaos Bakalos
- Institute of Communication and Computer Systems (ICCS), Patission Str. 42, 10682 Athens, Greece
- Maria Kaselimi
- Institute of Communication and Computer Systems (ICCS), Patission Str. 42, 10682 Athens, Greece
- Nikolaos Doulamis
- Institute of Communication and Computer Systems (ICCS), Patission Str. 42, 10682 Athens, Greece
- Anastasios Doulamis
- Institute of Communication and Computer Systems (ICCS), Patission Str. 42, 10682 Athens, Greece
- Dimitrios Kalogeras
- Institute of Communication and Computer Systems (ICCS), Patission Str. 42, 10682 Athens, Greece
- Mathaios Bimpas
- Institute of Communication and Computer Systems (ICCS), Patission Str. 42, 10682 Athens, Greece
- Agapi Davradou
- Institute of Communication and Computer Systems (ICCS), Patission Str. 42, 10682 Athens, Greece
- Aggeliki Vlachostergiou
- Intrasoft International SA (INTRA), Rue Nicolas Bove 2B, 1253 Luxembourg, Luxembourg
- Anaxagoras Fotopoulos
- Intrasoft International SA (INTRA), Rue Nicolas Bove 2B, 1253 Luxembourg, Luxembourg
- Maria Plakia
- Intrasoft International SA (INTRA), Rue Nicolas Bove 2B, 1253 Luxembourg, Luxembourg
- Alexandros Karalis
- Intrasoft International SA (INTRA), Rue Nicolas Bove 2B, 1253 Luxembourg, Luxembourg
- Sofia Tsekeridou
- Trilateral Research Ltd. (TRI), One Knightsbridge Green Office 5.12, 5th Floor, London SW1X 7QA, UK
- Themistoklis Anagnostopoulos
- Trilateral Research Ltd. (TRI), One Knightsbridge Green Office 5.12, 5th Floor, London SW1X 7QA, UK
- Angela Maria Despotopoulou
- Trilateral Research Ltd. (TRI), One Knightsbridge Green Office 5.12, 5th Floor, London SW1X 7QA, UK
- Ilaria Bonavita
- Satways-Proionta Kai Ypiresies Tilematikis Diktyakon Kai Tilepikinoniakon Efarmogon Etairia Periorismenis Efthinis Epe (Satways), 15 Megalou Konstantinou, Attica, 14122 Irakleio, Greece
- Katrina Petersen
- Satways-Proionta Kai Ypiresies Tilematikis Diktyakon Kai Tilepikinoniakon Efarmogon Etairia Periorismenis Efthinis Epe (Satways), 15 Megalou Konstantinou, Attica, 14122 Irakleio, Greece
- Leonidas Pelepes
- Computer Science Department, College of Engineering, Design & Physical Sciences, Brunel University London (BUL), Kingston Lane, London Borough of Hillingdon UB8 3PH, UK
- Lefteris Voumvourakis
- Computer Science Department, College of Engineering, Design & Physical Sciences, Brunel University London (BUL), Kingston Lane, London Borough of Hillingdon UB8 3PH, UK
- Anastasia Anagnostou
- Crisisplan BV (CPLAN), Frambozenweg 123, 2321 KA Leiden, The Netherlands
- Derek Groen
- Crisisplan BV (CPLAN), Frambozenweg 123, 2321 KA Leiden, The Netherlands
- Kate Mintram
- Crisisplan BV (CPLAN), Frambozenweg 123, 2321 KA Leiden, The Netherlands
- Arindam Saha
- Crisisplan BV (CPLAN), Frambozenweg 123, 2321 KA Leiden, The Netherlands
- Simon J. E. Taylor
- Crisisplan BV (CPLAN), Frambozenweg 123, 2321 KA Leiden, The Netherlands
- Charon van der Ham
- AIT Austrian Institute of Technology GmbH (AIT), Giefinggasse 4, 1210 Wien, Austria
- Patrick Kaleta
- Istituto Per L’interscambio Scientifico (I.S.I), Via Chisola 5, 10126 Torino, Italy
- Dražen Ignjatović
- Istituto Per L’interscambio Scientifico (I.S.I), Via Chisola 5, 10126 Torino, Italy
- Luca Rossi
- Istituto Per L’interscambio Scientifico (I.S.I), Via Chisola 5, 10126 Torino, Italy
- DOI
- https://doi.org/10.3390/technologies10030063
- Journal volume & issue
-
Vol. 10,
no. 3
p. 63
Abstract
This paper presents the components and integrated outcome of a system that aims to achieve early detection, monitoring and mitigation of pandemic outbreaks. The architecture of the platform aims at providing a number of pandemic-response-related services, on a modular basis, that allows for the easy customization of the platform to address user’s needs per case. This customization is achieved through its ability to deploy only the necessary, loosely coupled services and tools for each case, and by providing a common authentication, data storage and data exchange infrastructure. This way, the platform can provide the necessary services without the burden of additional services that are not of use in the current deployment (e.g., predictive models for pathogens that are not endemic to the deployment area). All the decisions taken for the communication and integration of the tools that compose the platform adhere to this basic principle. The tools presented here as well as their integration is part of the project STAMINA.
Keywords
