Nature Communications (Apr 2023)

Structural mechanism of a drug-binding process involving a large conformational change of the protein target

  • Pelin Ayaz,
  • Agatha Lyczek,
  • YiTing Paung,
  • Victoria R. Mingione,
  • Roxana E. Iacob,
  • Parker W. de Waal,
  • John R. Engen,
  • Markus A. Seeliger,
  • Yibing Shan,
  • David E. Shaw

DOI
https://doi.org/10.1038/s41467-023-36956-5
Journal volume & issue
Vol. 14, no. 1
pp. 1 – 15

Abstract

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Atomic-level descriptions of protein–small molecule binding processes that involve a large conformational change of the protein have been elusive. Here, the authors report unguided molecular dynamics simulations of such a process—Abl kinase binding the cancer drug imatinib.