Data Science Journal (Sep 2023)
Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
- Romain David,
- Audrey S. Richard,
- Claire Connellan,
- Katharina B. Lauer,
- Maria Luisa Chiusano,
- Carole Goble,
- Martin Houde,
- Isabel Kemmer,
- Antje Keppler,
- Philippe Lieutaud,
- Christian Ohmann,
- Maria Panagiotopoulou,
- Sara Raza Khan,
- Arina Rybina,
- Stian Soiland-Reyes,
- Charlotte Wit,
- Rudolf Wittner,
- Rafael Andrade Buono,
- Sarah Arnaud Marsh,
- Pauline Audergon,
- Dylan Bonfils,
- Jose-Maria Carazo,
- Remi Charrel,
- Frederik Coppens,
- Wolfgang Fecke,
- Claudia Filippone,
- Eva Garcia Alvarez,
- Sheraz Gul,
- Henning Hermjakob,
- Katja Herzog,
- Petr Holub,
- Lukasz Kozera,
- Allyson L. Lister,
- José López-Coronado,
- Bénédicte Madon,
- Kurt Majcen,
- William Martin,
- Wolfgang Müller,
- Elli Papadopoulou,
- Christine M.A. Prat,
- Paolo Romano,
- Susanna-Assunta Sansone,
- Gary Saunders,
- Niklas Blomberg,
- Jonathan Ewbank
Affiliations
- Romain David
- ORCiD
- European Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 Bruxelles
- Audrey S. Richard
- ORCiD
- European Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 Bruxelles
- Claire Connellan
- ORCiD
- European Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 Bruxelles
- Katharina B. Lauer
- ORCiD
- ELIXIR Hub, Wellcome Genome Campus, Hinxton, CB10 1SD
- Maria Luisa Chiusano
- ORCiD
- Dept. of Agricultural Sciences, University of Naples Federico II, and Stazione Zoologica Anton Dorhn, Naples
- Carole Goble
- ORCiD
- The University of Manchester, Oxford Road, Manchester, M13 9PL
- Martin Houde
- ORCiD
- European Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 Bruxelles
- Isabel Kemmer
- ORCiD
- Euro-BioImaging ERIC Bio-Hub, European Molecular Biology Laboratory (EMBL) Heidelberg, Meyerhofstrasse 1, 69117 Heidelberg
- Antje Keppler
- ORCiD
- Euro-BioImaging ERIC Bio-Hub, European Molecular Biology Laboratory (EMBL) Heidelberg, Meyerhofstrasse 1, 69117 Heidelberg
- Philippe Lieutaud
- ORCiD
- European Virus Archive – GLOBAL (EVA-GLOBAL), unité des virus émergents – [ UVE – UMR190 ] – Aix Marseille Université, IRD 190, INSERM U1207
- Christian Ohmann
- ORCiD
- European Clinical Research Infrastructure Network (ECRIN), Kaiserswerther Str. 70, 40477 Düsseldorf
- Maria Panagiotopoulou
- ORCiD
- European Clinical Research Infrastructure Network (ECRIN), 5-7 rue Watt 75013 Paris
- Sara Raza Khan
- ORCiD
- European Clinical Research Infrastructure Network (ECRIN), 5-7 rue Watt 75013 Paris
- Arina Rybina
- ORCiD
- Euro-BioImaging ERIC Bio-Hub, European Molecular Biology Laboratory (EMBL) Heidelberg, Meyerhofstrasse 1, 69117 Heidelberg
- Stian Soiland-Reyes
- ORCiD
- Department of Computer Science, The University of Manchester, Manchester, M13 9PL, UK; Informatics Institute, University of Amsterdam, LAB42, Science Park 900, 1098 XH Amsterdam
- Charlotte Wit
- ORCiD
- EU-OPENSCREEN, Robert-Rössle-Straße 10, Building 87, 13125 Berlin
- Rudolf Wittner
- ORCiD
- Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 Graz
- Rafael Andrade Buono
- ORCiD
- VIB-UGent Center for Plant Systems Biology, Ghent
- Sarah Arnaud Marsh
- ORCiD
- Institut Pasteur (IP), Genetics and Genomics of Insect Vectors Unit (Infravec) & Department of Anthropologie and Ecology of Disease Unit (Sonar-Global), 25-28 rue du Docteur Roux, 75724 Paris Cedex 15
- Pauline Audergon
- ORCiD
- Instruct-ERIC, Oxford House, Parkway Court, John Smith Drive, Oxford, OX4 2JY
- Dylan Bonfils
- ORCiD
- European Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 Bruxelles
- Jose-Maria Carazo
- ORCiD
- CNB-CSIC, Instruct-ES, Campus Universidad Autónoma, 28049, Madrid
- Remi Charrel
- ORCiD
- European Virus Archive – GLOBAL (EVA-GLOBAL), unité des virus émergents – [ UVE – UMR 190 ] – Aix Marseille Université, IRD 190, INSERM U1207, Marseille
- Frederik Coppens
- ORCiD
- VIB-UGent Center for Plant Systems Biology, Ghent
- Wolfgang Fecke
- ORCiD
- EU-OPENSCREEN, Robert-Rössle-Straße 10, Building 87, 13125 Berlin
- Claudia Filippone
- ORCiD
- European Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 Bruxelles
- Eva Garcia Alvarez
- ORCiD
- BBMRI-ERIC, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 Graz
- Sheraz Gul
- ORCiD
- Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, Schnackenburgallee 114, 22525 Hamburg, Germany Fraunhofer; Cluster of Excellence for Immune-Mediated Diseases CIMD, Schnackenburgallee 114, 22525 Hamburg
- Henning Hermjakob
- ORCiD
- European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton
- Katja Herzog
- ORCiD
- EU-OPENSCREEN, Robert-Rössle-Straße 10, Building 87, 13125 Berlin
- Petr Holub
- ORCiD
- BBMRI-ERIC, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 Graz
- Lukasz Kozera
- ORCiD
- BBMRI-ERIC, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 Graz
- Allyson L. Lister
- ORCiD
- Data Readiness Group, Oxford e-Research Centre, University of Oxford
- José López-Coronado
- ORCiD
- CECT-University of Valencia, Agustín Escardino 9,46980 Paterna (Valencia)
- Bénédicte Madon
- ORCiD
- La Rochelle Université, Littoral, Environnement et Sociétés (LIENSs), UMR 7266 CNRS – La Rochelle University, 2 rue Olympe de Gouges, 17000 La Rochelle
- Kurt Majcen
- ORCiD
- BBMRI-ERIC, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), Neue Stiftingtalstrasse 2, 8010 Graz
- William Martin
- ORCiD
- European Vaccine Initiative,Vossstrasse 2, Geb. 4040, 69115 Heidelberg
- Wolfgang Müller
- ORCiD
- Heidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg
- Elli Papadopoulou
- ORCiD
- ATHENA Research Center/OpenAIRE, Artemidos 6 & Epidavrou, 15125, Athens
- Christine M.A. Prat
- ORCiD
- European Virus Archive – GLOBAL (EVA-GLOBAL), unité des virus émergents – [ UVE – UMR190 ] – Aix Marseille Université, IRD 190, INSERM U1207, Marseille
- Paolo Romano
- ORCiD
- IRCCS Ospedale Policlinico San Martino, Largo Rosanna Benzi 10, 16132 Genova
- Susanna-Assunta Sansone
- ORCiD
- Data Readiness Group, Oxford e-Research Centre, University of Oxford
- Gary Saunders
- ORCiD
- EATRIS-ERIC, De Boelelaan 1118, 1081 HZ Amsterdam
- Niklas Blomberg
- ORCiD
- ELIXIR Hub, Wellcome Genome Campus, Hinxton, CB10 1SD
- Jonathan Ewbank
- ORCiD
- European Research Infrastructure on Highly Pathogenic Agents (ERINHA), 98 rue du Trône B-1050 Bruxelles
- DOI
- https://doi.org/10.5334/dsj-2023-035
- Journal volume & issue
-
Vol. 22
pp. 52 – 52
Abstract
The Horizon Europe project ISIDORe is dedicated to pandemic preparedness and responsiveness research. It brings together 17 research infrastructures (RIs) and networks to provide a broad range of services to infectious disease researchers. An efficient and structured treatment of data is central to ISIDORe’s aim to furnish seamless access to its multidisciplinary catalogue of services, and to ensure that users’ results are treated FAIRly. ISIDORe therefore requires a data management plan (DMP) covering both access management and research outputs, applicable over a broad range of disciplines, and compatible with the constraints and existing practices of its diverse partners. Here, we describe how, to achieve that aim, we undertook an iterative, step-by-step, process to build a community-approved living document, identifying good practices and processes, on the basis of use cases, presented as proof of concepts. International fora such as the RDA and EOSC, and primarily the BY-COVID project, furnished registries, tools and online data platforms, as well as standards, and the support of data scientists. Together, these elements provide a path for building an umbrella, FAIR-compliant DMP, aligned as fully as possible with FAIR principles, which could also be applied as a framework for data management harmonisation in other large-scale, challenge-driven projects. Finally, we discuss how data management and reuse can be further improved through the use of knowledge models when writing DMPs and, how, in the future, an inter-RI network of data stewards could contribute to the establishment of a community of practice, to be integrated subsequently into planned trans-RI competence centres.
Keywords
- data management plan
- dmp
- research data management
- rdm
- data management quality
- research data
- pandemic
- outbreak
- data services harmonisation
- data reuse
- fair principles
- data stewards