Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation
Natalia E. Gogoleva,
Vladimir Ya. Kataev,
Alexander S. Balkin,
Andrey O. Plotnikov,
Elena I. Shagimardanova,
Anastasia M. Subbot,
Sergey V. Cherkasov,
Yuri V. Gogolev
Affiliations
Natalia E. Gogoleva
Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, 2/31 Lobachevsky St., Kazan, 420111, Russian Federation; Institute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian Federation
Vladimir Ya. Kataev
Institute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian Federation
Alexander S. Balkin
Institute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian Federation
Andrey O. Plotnikov
Institute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian Federation; Corresponding author.
Elena I. Shagimardanova
Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 18 Kremlyovskaya St., Kazan, 420111, Russian Federation
Anastasia M. Subbot
Research Institute of Eye Diseases, 11 Rossolimo St., Moscow, 119021, Russian Federation
Sergey V. Cherkasov
Institute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian Federation
Yuri V. Gogolev
Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, 2/31 Lobachevsky St., Kazan, 420111, Russian Federation; Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 18 Kremlyovskaya St., Kazan, 420111, Russian Federation
Salmonella enterica is an ubiquitous pathogen throughout the world causing gastroenteritis in humans and animals. Survival of pathogenic bacteria in the external environment may be associated with the ability to overcome the stress caused by starvation. The bacterial response to starvation is well understood in laboratory cultures with a sufficiently high cell density. However, bacterial populations often have a small size when facing this challenge in natural biotopes. The aim of this work was to find out if there are differences in the transcriptomes of S. enterica depending on the factor of cell density during starvation. Here we present transcriptome data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S grown in carbon rich or carbon deficient medium with high or low cell density. These data will help identify genes involved in adaptation of low-density bacterial populations to starvation conditions.
