Nature Communications (Oct 2020)

Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis

  • Igor Mandric,
  • Tommer Schwarz,
  • Arunabha Majumdar,
  • Kangcheng Hou,
  • Leah Briscoe,
  • Richard Perez,
  • Meena Subramaniam,
  • Christoph Hafemeister,
  • Rahul Satija,
  • Chun Jimmie Ye,
  • Bogdan Pasaniuc,
  • Eran Halperin

DOI
https://doi.org/10.1038/s41467-020-19365-w
Journal volume & issue
Vol. 11, no. 1
pp. 1 – 9

Abstract

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Single cell RNA-sequencing can be a powerful approach to characterizing cell composition in a population of cells but is thought to be too expensive for population-scale analyses. Here, the authors show how lower coverage of more samples can increase the power to detect cell-type-specific eQTL.