Pharmacogenomics and Personalized Medicine (Jun 2021)
Identification of Independent and Communal Differentially Expressed Genes as Well as Potential Therapeutic Targets in Ischemic Heart Failure and Non-Ischemic Heart Failure
Abstract
Zuoxiang Wang,1,2 Mingyang Zhang,1,2 Yinan Xu,1,2 Yiyu Gu,1,2 Yumeng Song,1,2 Tingbo Jiang1 1Department of Cardiology, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu, People’s Republic of China; 2Department of Medicine, Soochow University, Suzhou, Jiangsu, People’s Republic of ChinaCorrespondence: Tingbo JiangDepartment of Cardiology, The First Affiliated Hospital of Soochow University, 188 Shizi Road, Suzhou, 215006, People’s Republic of ChinaTel +86 18906201122Email [email protected]: Heart failure (HF) is a rapidly growing public health problem, and its two main etiological types are non-ischemic heart failure (NIHF) and ischemic heart failure (IHF). However, the independent and common mechanisms of NIHF and IHF have not been fully elucidated. Here, bioinformatic analysis was used to characterize the difference and independent pathways for IHF and NIHF, and more importantly, to unearth the common potential markers and therapeutic targets in IHF and NIHF.Methods: Two data sets with accession numbers GSE26887 and GSE84796 were downloaded from the Gene Expression Omnibus (GEO) database. After identifying the independent and communal DEGs of NIHF and IHF, a functional annotation, protein–protein interaction (PPI) network analysis, co-expression and drug–gene interaction prediction analysis, and mRNA-miRNA regulatory network analysis were performed for DEGs.Results: We found 1146 independent DEGs (DEGs2) of NIHF mainly enriched in transcription-related and 2595 independent DEGs (DEGs3) of IHF mainly enriched in immune-related. Moreover, 185 communal DEGs (DEGs1) were found between NIHF and IHF, including 93 upregulated genes and 92 downregulated genes. Pathway enrichment analysis results showed that GPCR pathways and biological processes are closely related to the occurrence of HF. In addition, three hub genes were identified from PPI network, including CCL5, C5 and TLR3.Conclusion: The identification of DEGs and hub genes in this study contributes to a novel perception for potential functional mechanisms and biomarkers or therapeutic targets in NIHF and IHF.Keywords: bioinformatical analysis, differentially expressed genes, hub genes, heart failure, ischemic heart failure, non-ischemic heart failure
