PLoS ONE (Jan 2019)

Multi-channel framelet denoising of diffusion-weighted images.

  • Geng Chen,
  • Jian Zhang,
  • Yong Zhang,
  • Bin Dong,
  • Dinggang Shen,
  • Pew-Thian Yap

DOI
https://doi.org/10.1371/journal.pone.0211621
Journal volume & issue
Vol. 14, no. 2
p. e0211621

Abstract

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Diffusion MRI derives its contrast from MR signal attenuation induced by the movement of water molecules in microstructural environments. Associated with the signal attenuation is the reduction of signal-to-noise ratio (SNR). Methods based on total variation (TV) have shown superior performance in image noise reduction. However, TV denoising can result in stair-casing effects due to the inherent piecewise-constant assumption. In this paper, we propose a tight wavelet frame based approach for edge-preserving denoising of diffusion-weighted (DW) images. Specifically, we employ the unitary extension principle (UEP) to generate frames that are discrete analogues to differential operators of various orders, which will help avoid stair-casing effects. Instead of denoising each DW image separately, we collaboratively denoise groups of DW images acquired with adjacent gradient directions. In addition, we introduce a very efficient method for solving an ℓ0 denoising problem that involves only thresholding and solving a trivial inverse problem. We demonstrate the effectiveness of our method qualitatively and quantitatively using synthetic and real data.