Frontiers in Bioengineering and Biotechnology (Jan 2025)

Deciphering cellular complexity: advances and future directions in single-cell protein analysis

  • Qirui Zhao,
  • Qirui Zhao,
  • Qirui Zhao,
  • Shan Li,
  • Shan Li,
  • Shan Li,
  • Leonard Krall,
  • Leonard Krall,
  • Leonard Krall,
  • Qianyu Li,
  • Rongyuan Sun,
  • Yuqi Yin,
  • Jingyi Fu,
  • Xu Zhang,
  • Xu Zhang,
  • Xu Zhang,
  • Yonghua Wang,
  • Yonghua Wang,
  • Yonghua Wang,
  • Mei Yang,
  • Mei Yang,
  • Mei Yang

DOI
https://doi.org/10.3389/fbioe.2024.1507460
Journal volume & issue
Vol. 12

Abstract

Read online

Single-cell protein analysis has emerged as a powerful tool for understanding cellular heterogeneity and deciphering the complex mechanisms governing cellular function and fate. This review provides a comprehensive examination of the latest methodologies, including sophisticated cell isolation techniques (Fluorescence-Activated Cell Sorting (FACS), Magnetic-Activated Cell Sorting (MACS), Laser Capture Microdissection (LCM), manual cell picking, and microfluidics) and advanced approaches for protein profiling and protein-protein interaction analysis. The unique strengths, limitations, and opportunities of each method are discussed, along with their contributions to unraveling gene regulatory networks, cellular states, and disease mechanisms. The importance of data analysis and computational methods in extracting meaningful biological insights from the complex data generated by these technologies is also highlighted. By discussing recent progress, technological innovations, and potential future directions, this review emphasizes the critical role of single-cell protein analysis in advancing life science research and its promising applications in precision medicine, biomarker discovery, and targeted therapeutics. Deciphering cellular complexity at the single-cell level holds immense potential for transforming our understanding of biological processes and ultimately improving human health.

Keywords